Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29855 | 5' | -63.6 | NC_006273.1 | + | 110110 | 1.09 | 0.00105 |
Target: 5'- cGGGCCCGGACGCGCCACGCUCGCUCUg -3' miRNA: 3'- -CCCGGGCCUGCGCGGUGCGAGCGAGA- -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 1132 | 0.67 | 0.630949 |
Target: 5'- cGGCCCGGA-GCGCCuguUGCUguCUCa -3' miRNA: 3'- cCCGGGCCUgCGCGGu--GCGAgcGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 134986 | 0.67 | 0.640358 |
Target: 5'- -aGCCCGGucaaaugaGCGCCugGCUaCGCg-- -3' miRNA: 3'- ccCGGGCCug------CGCGGugCGA-GCGaga -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 198652 | 0.66 | 0.724002 |
Target: 5'- cGGGCCgagcugugccgcCGcucGCGCGCCucCGCUCGCg-- -3' miRNA: 3'- -CCCGG------------GCc--UGCGCGGu-GCGAGCGaga -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 174113 | 0.71 | 0.408978 |
Target: 5'- cGGCCuCGGccgcGCGCGCCGCGCU-GCa-- -3' miRNA: 3'- cCCGG-GCC----UGCGCGGUGCGAgCGaga -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 211886 | 0.69 | 0.510728 |
Target: 5'- uGGCaaCGG-CGUGCCGCGCUCGUgUCa -3' miRNA: 3'- cCCGg-GCCuGCGCGGUGCGAGCG-AGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 183092 | 0.69 | 0.519706 |
Target: 5'- uGGGCaaGGugGCGCUuCGCUaCGCg-- -3' miRNA: 3'- -CCCGggCCugCGCGGuGCGA-GCGaga -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 173954 | 0.68 | 0.556191 |
Target: 5'- aGGGCCUGGuagaguucgagGCGCaGCCgggcGCGCU-GCUCa -3' miRNA: 3'- -CCCGGGCC-----------UGCG-CGG----UGCGAgCGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 198270 | 0.68 | 0.60275 |
Target: 5'- aGGGCCUGcGGCGUuacuuGCgGCGCUUcgaggGCUCg -3' miRNA: 3'- -CCCGGGC-CUGCG-----CGgUGCGAG-----CGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 139343 | 0.67 | 0.628126 |
Target: 5'- cGGuGCCCGcGACuCGCCccuccuccaagaugGCGC-CGCUCg -3' miRNA: 3'- -CC-CGGGC-CUGcGCGG--------------UGCGaGCGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 203994 | 0.68 | 0.60275 |
Target: 5'- cGGCgauUCGGGCGUGCCGCGaugccgcaGCUCUu -3' miRNA: 3'- cCCG---GGCCUGCGCGGUGCgag-----CGAGA- -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 39147 | 0.68 | 0.60275 |
Target: 5'- aGGUCCGu-CGCGcCCACGC-CGUUCa -3' miRNA: 3'- cCCGGGCcuGCGC-GGUGCGaGCGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 84106 | 0.75 | 0.257175 |
Target: 5'- cGGCCCaGGAacgcuugaaaggucCGCGCCGCGC-CGCUUg -3' miRNA: 3'- cCCGGG-CCU--------------GCGCGGUGCGaGCGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 128950 | 0.67 | 0.612139 |
Target: 5'- -uGCCUGGACGCGCaauuCGUUUGCa-- -3' miRNA: 3'- ccCGGGCCUGCGCGgu--GCGAGCGaga -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 158751 | 0.71 | 0.393272 |
Target: 5'- cGGGUCgGGuCGCGCCagugcgccgucgACGC-CGCUCa -3' miRNA: 3'- -CCCGGgCCuGCGCGG------------UGCGaGCGAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 93028 | 0.68 | 0.565434 |
Target: 5'- cGGCCCGGGCccgaUGCCACGg-CGCUg- -3' miRNA: 3'- cCCGGGCCUGc---GCGGUGCgaGCGAga -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 140989 | 0.67 | 0.62154 |
Target: 5'- aGGUCCGGAgCGgGCCGCGCcCGgUg- -3' miRNA: 3'- cCCGGGCCU-GCgCGGUGCGaGCgAga -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 201174 | 0.67 | 0.639417 |
Target: 5'- cGGGUugcccgucaaguaCCGGACGCaCCGCGC-CGC-Cg -3' miRNA: 3'- -CCCG-------------GGCCUGCGcGGUGCGaGCGaGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 68549 | 0.71 | 0.393272 |
Target: 5'- -cGUCCGGugGUGCCGCGCUCuacUUCg -3' miRNA: 3'- ccCGGGCCugCGCGGUGCGAGc--GAGa -5' |
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29855 | 5' | -63.6 | NC_006273.1 | + | 227344 | 0.69 | 0.510728 |
Target: 5'- cGGCCgUGGagagGCGuCGCCGCGuCUCGUUCg -3' miRNA: 3'- cCCGG-GCC----UGC-GCGGUGC-GAGCGAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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