miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29856 5' -56 NC_006273.1 + 198646 0.66 0.946665
Target:  5'- cGGAGCCCG-GUCugagcUCcGACGCAGGAu -3'
miRNA:   3'- -UUUUGGGCaCGGc----AGaCUGCGUCCUu -5'
29856 5' -56 NC_006273.1 + 103507 0.66 0.946665
Target:  5'- aGAAGCCCGccaggugcgUGCCGUC-GAUGCGGc-- -3'
miRNA:   3'- -UUUUGGGC---------ACGGCAGaCUGCGUCcuu -5'
29856 5' -56 NC_006273.1 + 184239 0.66 0.942239
Target:  5'- aAAAGuCCCGUGUCGUCcccACGUAGGu- -3'
miRNA:   3'- -UUUU-GGGCACGGCAGac-UGCGUCCuu -5'
29856 5' -56 NC_006273.1 + 94127 0.66 0.922203
Target:  5'- cGAGcCCCGUGCCGggcaugggUCgcGGCGguGGAAa -3'
miRNA:   3'- -UUUuGGGCACGGC--------AGa-CUGCguCCUU- -5'
29856 5' -56 NC_006273.1 + 187029 0.67 0.910778
Target:  5'- --cACCCGggaGCCGcCUGAuCGcCAGGGAc -3'
miRNA:   3'- uuuUGGGCa--CGGCaGACU-GC-GUCCUU- -5'
29856 5' -56 NC_006273.1 + 192661 0.67 0.910778
Target:  5'- -cGGCUCGUcGCCGUgUGGCGCGGc-- -3'
miRNA:   3'- uuUUGGGCA-CGGCAgACUGCGUCcuu -5'
29856 5' -56 NC_006273.1 + 204738 0.67 0.904716
Target:  5'- --cGCCCGgcgcGUCGUCUGuguGCGGGAGc -3'
miRNA:   3'- uuuUGGGCa---CGGCAGACug-CGUCCUU- -5'
29856 5' -56 NC_006273.1 + 148593 0.68 0.885163
Target:  5'- --cGCCCGUGcCCGUCU-ACGCGGu-- -3'
miRNA:   3'- uuuUGGGCAC-GGCAGAcUGCGUCcuu -5'
29856 5' -56 NC_006273.1 + 19486 0.68 0.8782
Target:  5'- -cAACuCCGUGCCaG-CUGGCGCGGcGGAc -3'
miRNA:   3'- uuUUG-GGCACGG-CaGACUGCGUC-CUU- -5'
29856 5' -56 NC_006273.1 + 169361 0.68 0.871022
Target:  5'- uGAGCgCCGgGCCGUgCUGACGUccguAGGGAu -3'
miRNA:   3'- uUUUG-GGCaCGGCA-GACUGCG----UCCUU- -5'
29856 5' -56 NC_006273.1 + 55964 0.68 0.848246
Target:  5'- -cAGCaCCGUGCCG-CUGACGCGa--- -3'
miRNA:   3'- uuUUG-GGCACGGCaGACUGCGUccuu -5'
29856 5' -56 NC_006273.1 + 94710 0.69 0.823739
Target:  5'- --cACCCGccGUCGUCgccugcggcguUGGCGCAGGGAa -3'
miRNA:   3'- uuuUGGGCa-CGGCAG-----------ACUGCGUCCUU- -5'
29856 5' -56 NC_006273.1 + 140929 0.7 0.797694
Target:  5'- -cAGCCCGgccggGCCGUCgGAUGgGGGGu -3'
miRNA:   3'- uuUUGGGCa----CGGCAGaCUGCgUCCUu -5'
29856 5' -56 NC_006273.1 + 66173 0.71 0.741871
Target:  5'- -cGACCCGUaGacuuucagCGUCUGACGCAGGu- -3'
miRNA:   3'- uuUUGGGCA-Cg-------GCAGACUGCGUCCuu -5'
29856 5' -56 NC_006273.1 + 122823 0.71 0.712568
Target:  5'- aGAAGCaCCGgcgGCCG-CUGACGCGGcGAc -3'
miRNA:   3'- -UUUUG-GGCa--CGGCaGACUGCGUC-CUu -5'
29856 5' -56 NC_006273.1 + 112530 0.72 0.642245
Target:  5'- cGGGACCCGUcGCCGccccgUCUGACGCGGu-- -3'
miRNA:   3'- -UUUUGGGCA-CGGC-----AGACUGCGUCcuu -5'
29856 5' -56 NC_006273.1 + 71820 0.76 0.420238
Target:  5'- --uGCCCGUGCgaaGUgaGACGCAGGAGa -3'
miRNA:   3'- uuuUGGGCACGg--CAgaCUGCGUCCUU- -5'
29856 5' -56 NC_006273.1 + 158711 0.78 0.362017
Target:  5'- --uGCCCGUGacgcCCGcCUGACGCAGGAc -3'
miRNA:   3'- uuuUGGGCAC----GGCaGACUGCGUCCUu -5'
29856 5' -56 NC_006273.1 + 109867 1.04 0.007772
Target:  5'- gAAAACCCGUGCCGUCUGACGCAGGAAg -3'
miRNA:   3'- -UUUUGGGCACGGCAGACUGCGUCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.