Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29856 | 5' | -56 | NC_006273.1 | + | 71820 | 0.76 | 0.420238 |
Target: 5'- --uGCCCGUGCgaaGUgaGACGCAGGAGa -3' miRNA: 3'- uuuUGGGCACGg--CAgaCUGCGUCCUU- -5' |
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29856 | 5' | -56 | NC_006273.1 | + | 198646 | 0.66 | 0.946665 |
Target: 5'- cGGAGCCCG-GUCugagcUCcGACGCAGGAu -3' miRNA: 3'- -UUUUGGGCaCGGc----AGaCUGCGUCCUu -5' |
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29856 | 5' | -56 | NC_006273.1 | + | 103507 | 0.66 | 0.946665 |
Target: 5'- aGAAGCCCGccaggugcgUGCCGUC-GAUGCGGc-- -3' miRNA: 3'- -UUUUGGGC---------ACGGCAGaCUGCGUCcuu -5' |
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29856 | 5' | -56 | NC_006273.1 | + | 94127 | 0.66 | 0.922203 |
Target: 5'- cGAGcCCCGUGCCGggcaugggUCgcGGCGguGGAAa -3' miRNA: 3'- -UUUuGGGCACGGC--------AGa-CUGCguCCUU- -5' |
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29856 | 5' | -56 | NC_006273.1 | + | 192661 | 0.67 | 0.910778 |
Target: 5'- -cGGCUCGUcGCCGUgUGGCGCGGc-- -3' miRNA: 3'- uuUUGGGCA-CGGCAgACUGCGUCcuu -5' |
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29856 | 5' | -56 | NC_006273.1 | + | 187029 | 0.67 | 0.910778 |
Target: 5'- --cACCCGggaGCCGcCUGAuCGcCAGGGAc -3' miRNA: 3'- uuuUGGGCa--CGGCaGACU-GC-GUCCUU- -5' |
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29856 | 5' | -56 | NC_006273.1 | + | 204738 | 0.67 | 0.904716 |
Target: 5'- --cGCCCGgcgcGUCGUCUGuguGCGGGAGc -3' miRNA: 3'- uuuUGGGCa---CGGCAGACug-CGUCCUU- -5' |
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29856 | 5' | -56 | NC_006273.1 | + | 148593 | 0.68 | 0.885163 |
Target: 5'- --cGCCCGUGcCCGUCU-ACGCGGu-- -3' miRNA: 3'- uuuUGGGCAC-GGCAGAcUGCGUCcuu -5' |
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29856 | 5' | -56 | NC_006273.1 | + | 19486 | 0.68 | 0.8782 |
Target: 5'- -cAACuCCGUGCCaG-CUGGCGCGGcGGAc -3' miRNA: 3'- uuUUG-GGCACGG-CaGACUGCGUC-CUU- -5' |
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29856 | 5' | -56 | NC_006273.1 | + | 55964 | 0.68 | 0.848246 |
Target: 5'- -cAGCaCCGUGCCG-CUGACGCGa--- -3' miRNA: 3'- uuUUG-GGCACGGCaGACUGCGUccuu -5' |
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29856 | 5' | -56 | NC_006273.1 | + | 66173 | 0.71 | 0.741871 |
Target: 5'- -cGACCCGUaGacuuucagCGUCUGACGCAGGu- -3' miRNA: 3'- uuUUGGGCA-Cg-------GCAGACUGCGUCCuu -5' |
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29856 | 5' | -56 | NC_006273.1 | + | 112530 | 0.72 | 0.642245 |
Target: 5'- cGGGACCCGUcGCCGccccgUCUGACGCGGu-- -3' miRNA: 3'- -UUUUGGGCA-CGGC-----AGACUGCGUCcuu -5' |
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29856 | 5' | -56 | NC_006273.1 | + | 169361 | 0.68 | 0.871022 |
Target: 5'- uGAGCgCCGgGCCGUgCUGACGUccguAGGGAu -3' miRNA: 3'- uUUUG-GGCaCGGCA-GACUGCG----UCCUU- -5' |
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29856 | 5' | -56 | NC_006273.1 | + | 94710 | 0.69 | 0.823739 |
Target: 5'- --cACCCGccGUCGUCgccugcggcguUGGCGCAGGGAa -3' miRNA: 3'- uuuUGGGCa-CGGCAG-----------ACUGCGUCCUU- -5' |
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29856 | 5' | -56 | NC_006273.1 | + | 140929 | 0.7 | 0.797694 |
Target: 5'- -cAGCCCGgccggGCCGUCgGAUGgGGGGu -3' miRNA: 3'- uuUUGGGCa----CGGCAGaCUGCgUCCUu -5' |
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29856 | 5' | -56 | NC_006273.1 | + | 122823 | 0.71 | 0.712568 |
Target: 5'- aGAAGCaCCGgcgGCCG-CUGACGCGGcGAc -3' miRNA: 3'- -UUUUG-GGCa--CGGCaGACUGCGUC-CUu -5' |
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29856 | 5' | -56 | NC_006273.1 | + | 158711 | 0.78 | 0.362017 |
Target: 5'- --uGCCCGUGacgcCCGcCUGACGCAGGAc -3' miRNA: 3'- uuuUGGGCAC----GGCaGACUGCGUCCUu -5' |
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29856 | 5' | -56 | NC_006273.1 | + | 109867 | 1.04 | 0.007772 |
Target: 5'- gAAAACCCGUGCCGUCUGACGCAGGAAg -3' miRNA: 3'- -UUUUGGGCACGGCAGACUGCGUCCUU- -5' |
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29856 | 5' | -56 | NC_006273.1 | + | 184239 | 0.66 | 0.942239 |
Target: 5'- aAAAGuCCCGUGUCGUCcccACGUAGGu- -3' miRNA: 3'- -UUUU-GGGCACGGCAGac-UGCGUCCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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