miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2987 3' -55.6 NC_001493.1 + 96539 0.66 0.904784
Target:  5'- aGUCGAcGGGUaguaCCAUCACCGAcGgUGAg -3'
miRNA:   3'- gCGGUUcUCCA----GGUAGUGGCU-CgACU- -5'
2987 3' -55.6 NC_001493.1 + 110275 0.66 0.89836
Target:  5'- uGCCAccAGGGGcucaaucuucgCCAUCGCCGcGCgGAg -3'
miRNA:   3'- gCGGU--UCUCCa----------GGUAGUGGCuCGaCU- -5'
2987 3' -55.6 NC_001493.1 + 82064 0.66 0.884804
Target:  5'- gGCCAcGcGGUCUuugAUCGCCuGGCUGGc -3'
miRNA:   3'- gCGGUuCuCCAGG---UAGUGGcUCGACU- -5'
2987 3' -55.6 NC_001493.1 + 109764 0.69 0.757462
Target:  5'- gCGCCAucaucAGGGugaGUCCGUCACCaGGCUcGAa -3'
miRNA:   3'- -GCGGU-----UCUC---CAGGUAGUGGcUCGA-CU- -5'
2987 3' -55.6 NC_001493.1 + 46999 0.69 0.737899
Target:  5'- uGCCAGcuGGUCCAg-ACCGcGCUGAg -3'
miRNA:   3'- gCGGUUcuCCAGGUagUGGCuCGACU- -5'
2987 3' -55.6 NC_001493.1 + 106753 0.7 0.706858
Target:  5'- uGaCCAAGGGGUCaCAugcguccUUGCCGGGCUGc -3'
miRNA:   3'- gC-GGUUCUCCAG-GU-------AGUGGCUCGACu -5'
2987 3' -55.6 NC_001493.1 + 53081 0.7 0.687507
Target:  5'- gGCCuucAAGGGGUUCGUCcUCGAGaCUGAc -3'
miRNA:   3'- gCGG---UUCUCCAGGUAGuGGCUC-GACU- -5'
2987 3' -55.6 NC_001493.1 + 29735 0.71 0.635933
Target:  5'- uCGCCuucGAGAGGUCCAUCAcgguggucCCGAGg--- -3'
miRNA:   3'- -GCGG---UUCUCCAGGUAGU--------GGCUCgacu -5'
2987 3' -55.6 NC_001493.1 + 79434 0.72 0.594562
Target:  5'- gGUCGAGAacccuaccaGGUCUAUCACCGAaCUGGu -3'
miRNA:   3'- gCGGUUCU---------CCAGGUAGUGGCUcGACU- -5'
2987 3' -55.6 NC_001493.1 + 64219 0.8 0.230124
Target:  5'- uCGCCGuGGGGUCCGUCAuCCGAGCc-- -3'
miRNA:   3'- -GCGGUuCUCCAGGUAGU-GGCUCGacu -5'
2987 3' -55.6 NC_001493.1 + 105773 1.09 0.002507
Target:  5'- cCGCCAAGAGGUCCAUCACCGAGCUGAa -3'
miRNA:   3'- -GCGGUUCUCCAGGUAGUGGCUCGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.