Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2989 | 3' | -52.6 | NC_001493.1 | + | 107485 | 1.1 | 0.004638 |
Target: 5'- aUCACCGAUCGCGCCAUACAGAUCGAGa -3' miRNA: 3'- -AGUGGCUAGCGCGGUAUGUCUAGCUC- -5' |
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2989 | 3' | -52.6 | NC_001493.1 | + | 88802 | 0.73 | 0.73388 |
Target: 5'- cUCACCGAgucgguaCGUGCCucgaacauCGGGUCGAGg -3' miRNA: 3'- -AGUGGCUa------GCGCGGuau-----GUCUAGCUC- -5' |
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2989 | 3' | -52.6 | NC_001493.1 | + | 45618 | 0.7 | 0.868834 |
Target: 5'- aUCACCGAacagCGCGUgGcACAGAcCGGGa -3' miRNA: 3'- -AGUGGCUa---GCGCGgUaUGUCUaGCUC- -5' |
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2989 | 3' | -52.6 | NC_001493.1 | + | 10720 | 0.69 | 0.890617 |
Target: 5'- gUCACCGAUCGCcGaaAUACAGcgUGGu -3' miRNA: 3'- -AGUGGCUAGCG-CggUAUGUCuaGCUc -5' |
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2989 | 3' | -52.6 | NC_001493.1 | + | 126274 | 0.69 | 0.890617 |
Target: 5'- gUCACCGAUCGCcGaaAUACAGcgUGGu -3' miRNA: 3'- -AGUGGCUAGCG-CggUAUGUCuaGCUc -5' |
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2989 | 3' | -52.6 | NC_001493.1 | + | 22601 | 0.69 | 0.897406 |
Target: 5'- gCACCG--CGCGUCAUGgagaGGGUCGAGc -3' miRNA: 3'- aGUGGCuaGCGCGGUAUg---UCUAGCUC- -5' |
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2989 | 3' | -52.6 | NC_001493.1 | + | 51947 | 0.68 | 0.931388 |
Target: 5'- aUCACCGuuGUCGCgGCCuuguUGuuacuguucaauucCAGGUCGAGa -3' miRNA: 3'- -AGUGGC--UAGCG-CGGu---AU--------------GUCUAGCUC- -5' |
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2989 | 3' | -52.6 | NC_001493.1 | + | 94916 | 0.68 | 0.932951 |
Target: 5'- aUCGCUGGUCaGUGCCAUuagcuguucGCGcAUCGGGg -3' miRNA: 3'- -AGUGGCUAG-CGCGGUA---------UGUcUAGCUC- -5' |
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2989 | 3' | -52.6 | NC_001493.1 | + | 44239 | 0.68 | 0.942793 |
Target: 5'- aCACCaacccgaugGAUCGCGCCGUAuCGGGg-GGGa -3' miRNA: 3'- aGUGG---------CUAGCGCGGUAU-GUCUagCUC- -5' |
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2989 | 3' | -52.6 | NC_001493.1 | + | 20746 | 0.68 | 0.942793 |
Target: 5'- -gACCGAacccggCGgGCCAUACAagcuGAUCGAc -3' miRNA: 3'- agUGGCUa-----GCgCGGUAUGU----CUAGCUc -5' |
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2989 | 3' | -52.6 | NC_001493.1 | + | 52686 | 0.67 | 0.951644 |
Target: 5'- aCGCgGGUUGaGCCAUGCGG-UCGAu -3' miRNA: 3'- aGUGgCUAGCgCGGUAUGUCuAGCUc -5' |
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2989 | 3' | -52.6 | NC_001493.1 | + | 31099 | 0.67 | 0.951644 |
Target: 5'- cCGCCGAcCGCGCCGUcaccGCGGccgucacCGGGa -3' miRNA: 3'- aGUGGCUaGCGCGGUA----UGUCua-----GCUC- -5' |
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2989 | 3' | -52.6 | NC_001493.1 | + | 37654 | 0.67 | 0.951644 |
Target: 5'- -aGCCGAUCGagGCCcaccaaacaaugGUACAGGUCGc- -3' miRNA: 3'- agUGGCUAGCg-CGG------------UAUGUCUAGCuc -5' |
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2989 | 3' | -52.6 | NC_001493.1 | + | 30926 | 0.67 | 0.955705 |
Target: 5'- aCGCCccUCGUGCCGUACAccgCGGGu -3' miRNA: 3'- aGUGGcuAGCGCGGUAUGUcuaGCUC- -5' |
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2989 | 3' | -52.6 | NC_001493.1 | + | 56914 | 0.67 | 0.955705 |
Target: 5'- cCGCCGGUauaacaaaGCCAUccgccACGGGUCGGGg -3' miRNA: 3'- aGUGGCUAgcg-----CGGUA-----UGUCUAGCUC- -5' |
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2989 | 3' | -52.6 | NC_001493.1 | + | 43622 | 0.67 | 0.955705 |
Target: 5'- cUACgaGAUCG-GCCGcGCAGAUCGAc -3' miRNA: 3'- aGUGg-CUAGCgCGGUaUGUCUAGCUc -5' |
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2989 | 3' | -52.6 | NC_001493.1 | + | 56630 | 0.67 | 0.959527 |
Target: 5'- gCACCGAUC-CGCCcgagGCGGGcgCGAa -3' miRNA: 3'- aGUGGCUAGcGCGGua--UGUCUa-GCUc -5' |
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2989 | 3' | -52.6 | NC_001493.1 | + | 123656 | 0.67 | 0.959527 |
Target: 5'- aCAUCGAUgGaCGCCAUGguGAU-GAGu -3' miRNA: 3'- aGUGGCUAgC-GCGGUAUguCUAgCUC- -5' |
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2989 | 3' | -52.6 | NC_001493.1 | + | 44569 | 0.67 | 0.959527 |
Target: 5'- cCGCCGcggacAUCGCGCgg-GCGGA-CGAGg -3' miRNA: 3'- aGUGGC-----UAGCGCGguaUGUCUaGCUC- -5' |
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2989 | 3' | -52.6 | NC_001493.1 | + | 8102 | 0.67 | 0.959527 |
Target: 5'- aCAUCGAUgGaCGCCAUGguGAU-GAGu -3' miRNA: 3'- aGUGGCUAgC-GCGGUAUguCUAgCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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