Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29894 | 3' | -54 | NC_006273.1 | + | 38227 | 0.66 | 0.987676 |
Target: 5'- cGGAAAC-CGCGgcGCCGgaggaaACGGGGa--- -3' miRNA: 3'- -UCUUUGaGCGCa-CGGC------UGCCCCaaag -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 92616 | 0.66 | 0.986124 |
Target: 5'- cGGAAGC-CaGCGUGUaaucauaACGGGGUUUUg -3' miRNA: 3'- -UCUUUGaG-CGCACGgc-----UGCCCCAAAG- -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 114515 | 0.66 | 0.982574 |
Target: 5'- cGGcGACg-GCGUGCaCGGCGGGcGUUa- -3' miRNA: 3'- -UCuUUGagCGCACG-GCUGCCC-CAAag -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 188991 | 0.66 | 0.982574 |
Target: 5'- uGggGCUCGCGaucccuggGCCauGAUGGGGc--- -3' miRNA: 3'- uCuuUGAGCGCa-------CGG--CUGCCCCaaag -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 195876 | 0.66 | 0.982574 |
Target: 5'- ----uCUUGUGUGCCGAUGGGa---- -3' miRNA: 3'- ucuuuGAGCGCACGGCUGCCCcaaag -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 147147 | 0.66 | 0.982574 |
Target: 5'- cGAAAUgUCGCGUGUCGACu-GGUUUa -3' miRNA: 3'- uCUUUG-AGCGCACGGCUGccCCAAAg -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 101698 | 0.66 | 0.980562 |
Target: 5'- uGAGAC-CGC-UGCCGGgGGGcGggUCa -3' miRNA: 3'- uCUUUGaGCGcACGGCUgCCC-CaaAG- -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 145328 | 0.67 | 0.978381 |
Target: 5'- cGggGCUgUGCGagGCCuGugGGGGUa-- -3' miRNA: 3'- uCuuUGA-GCGCa-CGG-CugCCCCAaag -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 120502 | 0.67 | 0.978381 |
Target: 5'- uAGAGuCguccuaagCGCGUGCgCGGCGGGuGgcUCa -3' miRNA: 3'- -UCUUuGa-------GCGCACG-GCUGCCC-CaaAG- -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 210282 | 0.67 | 0.976024 |
Target: 5'- gAGAAACaUGacCGUGuuGACGGGGg--- -3' miRNA: 3'- -UCUUUGaGC--GCACggCUGCCCCaaag -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 185441 | 0.67 | 0.976024 |
Target: 5'- cAGGAACucUCGCGUcGCCGGCGGu----- -3' miRNA: 3'- -UCUUUG--AGCGCA-CGGCUGCCccaaag -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 186748 | 0.67 | 0.96783 |
Target: 5'- ---cGCUgCGUGcGCCGACGGcGUUUCa -3' miRNA: 3'- ucuuUGA-GCGCaCGGCUGCCcCAAAG- -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 7803 | 0.67 | 0.964704 |
Target: 5'- uGGAAcACUCGCGU-CCGGuuGGGUaUCa -3' miRNA: 3'- -UCUU-UGAGCGCAcGGCUgcCCCAaAG- -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 132356 | 0.67 | 0.964704 |
Target: 5'- uGGAAGC-CGCGgccgcUGCCGccGCGGcGUUUCg -3' miRNA: 3'- -UCUUUGaGCGC-----ACGGC--UGCCcCAAAG- -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 40793 | 0.68 | 0.957825 |
Target: 5'- cGGgcGCUCGgGgguUGgCGGCGGGuGUUUCu -3' miRNA: 3'- -UCuuUGAGCgC---ACgGCUGCCC-CAAAG- -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 855 | 0.68 | 0.957825 |
Target: 5'- cGGgcGCUCGgGgguUGgCGGCGGGuGUUUCu -3' miRNA: 3'- -UCuuUGAGCgC---ACgGCUGCCC-CAAAG- -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 1109 | 0.68 | 0.954063 |
Target: 5'- gGGAuggcgGGCUguUGCGUGCCGgggACGGGGgacUCu -3' miRNA: 3'- -UCU-----UUGA--GCGCACGGC---UGCCCCaa-AG- -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 124201 | 0.68 | 0.954063 |
Target: 5'- --uGGCUCGUG-GCCGACGGGc---- -3' miRNA: 3'- ucuUUGAGCGCaCGGCUGCCCcaaag -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 41047 | 0.68 | 0.954063 |
Target: 5'- gGGAuggcgGGCUguUGCGUGCCGgggACGGGGgacUCu -3' miRNA: 3'- -UCU-----UUGA--GCGCACGGC---UGCCCCaa-AG- -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 204854 | 0.69 | 0.931892 |
Target: 5'- aAGuGACgcgGgGUGCUGACGGGGUUc- -3' miRNA: 3'- -UCuUUGag-CgCACGGCUGCCCCAAag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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