Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29894 | 3' | -54 | NC_006273.1 | + | 102888 | 0.7 | 0.891218 |
Target: 5'- aAGAAAUagacCGgGUGCCGGuCGGGGUg-- -3' miRNA: 3'- -UCUUUGa---GCgCACGGCU-GCCCCAaag -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 178514 | 0.7 | 0.891218 |
Target: 5'- cGGGAACagcggcaaaUCGCGUGgCGGCGGcGGUg-- -3' miRNA: 3'- -UCUUUG---------AGCGCACgGCUGCC-CCAaag -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 235015 | 0.71 | 0.850923 |
Target: 5'- gGGuGugUCGCGggcgugugccgggugUGUCGGCGGGGUgugUCa -3' miRNA: 3'- -UCuUugAGCGC---------------ACGGCUGCCCCAa--AG- -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 184 | 0.71 | 0.850923 |
Target: 5'- gGGuGugUCGCGggcgugugccgggugUGUCGGCGGGGUgugUCa -3' miRNA: 3'- -UCuUugAGCGC---------------ACGGCUGCCCCAa--AG- -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 195077 | 0.71 | 0.850923 |
Target: 5'- gGGuGugUCGCGggcgugugccgggugUGUCGGCGGGGUgugUCa -3' miRNA: 3'- -UCuUugAGCGC---------------ACGGCUGCCCCAa--AG- -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 87739 | 0.74 | 0.732638 |
Target: 5'- aAGAGAgUCGCGaagGCCcGCGGGGUcuuuuUUCa -3' miRNA: 3'- -UCUUUgAGCGCa--CGGcUGCCCCA-----AAG- -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 90543 | 1.1 | 0.005841 |
Target: 5'- cAGAAACUCGCGUGCCGACGGGGUUUCg -3' miRNA: 3'- -UCUUUGAGCGCACGGCUGCCCCAAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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