miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29894 3' -54 NC_006273.1 + 184 0.71 0.850923
Target:  5'- gGGuGugUCGCGggcgugugccgggugUGUCGGCGGGGUgugUCa -3'
miRNA:   3'- -UCuUugAGCGC---------------ACGGCUGCCCCAa--AG- -5'
29894 3' -54 NC_006273.1 + 855 0.68 0.957825
Target:  5'- cGGgcGCUCGgGgguUGgCGGCGGGuGUUUCu -3'
miRNA:   3'- -UCuuUGAGCgC---ACgGCUGCCC-CAAAG- -5'
29894 3' -54 NC_006273.1 + 1109 0.68 0.954063
Target:  5'- gGGAuggcgGGCUguUGCGUGCCGgggACGGGGgacUCu -3'
miRNA:   3'- -UCU-----UUGA--GCGCACGGC---UGCCCCaa-AG- -5'
29894 3' -54 NC_006273.1 + 7803 0.67 0.964704
Target:  5'- uGGAAcACUCGCGU-CCGGuuGGGUaUCa -3'
miRNA:   3'- -UCUU-UGAGCGCAcGGCUgcCCCAaAG- -5'
29894 3' -54 NC_006273.1 + 38227 0.66 0.987676
Target:  5'- cGGAAAC-CGCGgcGCCGgaggaaACGGGGa--- -3'
miRNA:   3'- -UCUUUGaGCGCa-CGGC------UGCCCCaaag -5'
29894 3' -54 NC_006273.1 + 40793 0.68 0.957825
Target:  5'- cGGgcGCUCGgGgguUGgCGGCGGGuGUUUCu -3'
miRNA:   3'- -UCuuUGAGCgC---ACgGCUGCCC-CAAAG- -5'
29894 3' -54 NC_006273.1 + 41047 0.68 0.954063
Target:  5'- gGGAuggcgGGCUguUGCGUGCCGgggACGGGGgacUCu -3'
miRNA:   3'- -UCU-----UUGA--GCGCACGGC---UGCCCCaa-AG- -5'
29894 3' -54 NC_006273.1 + 87739 0.74 0.732638
Target:  5'- aAGAGAgUCGCGaagGCCcGCGGGGUcuuuuUUCa -3'
miRNA:   3'- -UCUUUgAGCGCa--CGGcUGCCCCA-----AAG- -5'
29894 3' -54 NC_006273.1 + 90543 1.1 0.005841
Target:  5'- cAGAAACUCGCGUGCCGACGGGGUUUCg -3'
miRNA:   3'- -UCUUUGAGCGCACGGCUGCCCCAAAG- -5'
29894 3' -54 NC_006273.1 + 92616 0.66 0.986124
Target:  5'- cGGAAGC-CaGCGUGUaaucauaACGGGGUUUUg -3'
miRNA:   3'- -UCUUUGaG-CGCACGgc-----UGCCCCAAAG- -5'
29894 3' -54 NC_006273.1 + 101698 0.66 0.980562
Target:  5'- uGAGAC-CGC-UGCCGGgGGGcGggUCa -3'
miRNA:   3'- uCUUUGaGCGcACGGCUgCCC-CaaAG- -5'
29894 3' -54 NC_006273.1 + 102888 0.7 0.891218
Target:  5'- aAGAAAUagacCGgGUGCCGGuCGGGGUg-- -3'
miRNA:   3'- -UCUUUGa---GCgCACGGCU-GCCCCAaag -5'
29894 3' -54 NC_006273.1 + 114515 0.66 0.982574
Target:  5'- cGGcGACg-GCGUGCaCGGCGGGcGUUa- -3'
miRNA:   3'- -UCuUUGagCGCACG-GCUGCCC-CAAag -5'
29894 3' -54 NC_006273.1 + 120502 0.67 0.978381
Target:  5'- uAGAGuCguccuaagCGCGUGCgCGGCGGGuGgcUCa -3'
miRNA:   3'- -UCUUuGa-------GCGCACG-GCUGCCC-CaaAG- -5'
29894 3' -54 NC_006273.1 + 124201 0.68 0.954063
Target:  5'- --uGGCUCGUG-GCCGACGGGc---- -3'
miRNA:   3'- ucuUUGAGCGCaCGGCUGCCCcaaag -5'
29894 3' -54 NC_006273.1 + 132356 0.67 0.964704
Target:  5'- uGGAAGC-CGCGgccgcUGCCGccGCGGcGUUUCg -3'
miRNA:   3'- -UCUUUGaGCGC-----ACGGC--UGCCcCAAAG- -5'
29894 3' -54 NC_006273.1 + 145328 0.67 0.978381
Target:  5'- cGggGCUgUGCGagGCCuGugGGGGUa-- -3'
miRNA:   3'- uCuuUGA-GCGCa-CGG-CugCCCCAaag -5'
29894 3' -54 NC_006273.1 + 147147 0.66 0.982574
Target:  5'- cGAAAUgUCGCGUGUCGACu-GGUUUa -3'
miRNA:   3'- uCUUUG-AGCGCACGGCUGccCCAAAg -5'
29894 3' -54 NC_006273.1 + 178514 0.7 0.891218
Target:  5'- cGGGAACagcggcaaaUCGCGUGgCGGCGGcGGUg-- -3'
miRNA:   3'- -UCUUUG---------AGCGCACgGCUGCC-CCAaag -5'
29894 3' -54 NC_006273.1 + 185441 0.67 0.976024
Target:  5'- cAGGAACucUCGCGUcGCCGGCGGu----- -3'
miRNA:   3'- -UCUUUG--AGCGCA-CGGCUGCCccaaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.