miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29894 3' -54 NC_006273.1 + 41047 0.68 0.954063
Target:  5'- gGGAuggcgGGCUguUGCGUGCCGgggACGGGGgacUCu -3'
miRNA:   3'- -UCU-----UUGA--GCGCACGGC---UGCCCCaa-AG- -5'
29894 3' -54 NC_006273.1 + 40793 0.68 0.957825
Target:  5'- cGGgcGCUCGgGgguUGgCGGCGGGuGUUUCu -3'
miRNA:   3'- -UCuuUGAGCgC---ACgGCUGCCC-CAAAG- -5'
29894 3' -54 NC_006273.1 + 38227 0.66 0.987676
Target:  5'- cGGAAAC-CGCGgcGCCGgaggaaACGGGGa--- -3'
miRNA:   3'- -UCUUUGaGCGCa-CGGC------UGCCCCaaag -5'
29894 3' -54 NC_006273.1 + 7803 0.67 0.964704
Target:  5'- uGGAAcACUCGCGU-CCGGuuGGGUaUCa -3'
miRNA:   3'- -UCUU-UGAGCGCAcGGCUgcCCCAaAG- -5'
29894 3' -54 NC_006273.1 + 1109 0.68 0.954063
Target:  5'- gGGAuggcgGGCUguUGCGUGCCGgggACGGGGgacUCu -3'
miRNA:   3'- -UCU-----UUGA--GCGCACGGC---UGCCCCaa-AG- -5'
29894 3' -54 NC_006273.1 + 855 0.68 0.957825
Target:  5'- cGGgcGCUCGgGgguUGgCGGCGGGuGUUUCu -3'
miRNA:   3'- -UCuuUGAGCgC---ACgGCUGCCC-CAAAG- -5'
29894 3' -54 NC_006273.1 + 184 0.71 0.850923
Target:  5'- gGGuGugUCGCGggcgugugccgggugUGUCGGCGGGGUgugUCa -3'
miRNA:   3'- -UCuUugAGCGC---------------ACGGCUGCCCCAa--AG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.