Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29894 | 3' | -54 | NC_006273.1 | + | 41047 | 0.68 | 0.954063 |
Target: 5'- gGGAuggcgGGCUguUGCGUGCCGgggACGGGGgacUCu -3' miRNA: 3'- -UCU-----UUGA--GCGCACGGC---UGCCCCaa-AG- -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 40793 | 0.68 | 0.957825 |
Target: 5'- cGGgcGCUCGgGgguUGgCGGCGGGuGUUUCu -3' miRNA: 3'- -UCuuUGAGCgC---ACgGCUGCCC-CAAAG- -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 38227 | 0.66 | 0.987676 |
Target: 5'- cGGAAAC-CGCGgcGCCGgaggaaACGGGGa--- -3' miRNA: 3'- -UCUUUGaGCGCa-CGGC------UGCCCCaaag -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 7803 | 0.67 | 0.964704 |
Target: 5'- uGGAAcACUCGCGU-CCGGuuGGGUaUCa -3' miRNA: 3'- -UCUU-UGAGCGCAcGGCUgcCCCAaAG- -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 1109 | 0.68 | 0.954063 |
Target: 5'- gGGAuggcgGGCUguUGCGUGCCGgggACGGGGgacUCu -3' miRNA: 3'- -UCU-----UUGA--GCGCACGGC---UGCCCCaa-AG- -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 855 | 0.68 | 0.957825 |
Target: 5'- cGGgcGCUCGgGgguUGgCGGCGGGuGUUUCu -3' miRNA: 3'- -UCuuUGAGCgC---ACgGCUGCCC-CAAAG- -5' |
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29894 | 3' | -54 | NC_006273.1 | + | 184 | 0.71 | 0.850923 |
Target: 5'- gGGuGugUCGCGggcgugugccgggugUGUCGGCGGGGUgugUCa -3' miRNA: 3'- -UCuUugAGCGC---------------ACGGCUGCCCCAa--AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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