miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29894 5' -59.7 NC_006273.1 + 149410 0.66 0.8749
Target:  5'- -gGAGAUUCgACGUCCgcugcccgauGGCACgGGGg -3'
miRNA:   3'- cgCUUUGAGgUGCGGG----------CCGUGgCCCa -5'
29894 5' -59.7 NC_006273.1 + 187536 0.66 0.8749
Target:  5'- ---cGACUCC-CGCCguaCGGCGCCGaGGc -3'
miRNA:   3'- cgcuUUGAGGuGCGG---GCCGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 117205 0.66 0.8749
Target:  5'- gGCGAcagccgcagucaGGCcgCCACG-CCGGCgGCUGGGg -3'
miRNA:   3'- -CGCU------------UUGa-GGUGCgGGCCG-UGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 144447 0.66 0.872847
Target:  5'- gGCGGcGGCUCgcacuacacgggcuCGCGCgCCGGCgucucGCCGGGc -3'
miRNA:   3'- -CGCU-UUGAG--------------GUGCG-GGCCG-----UGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 42301 0.66 0.867989
Target:  5'- gGCGAuccAGCUCCAgcCGUCCagcGGCugCGuGGg -3'
miRNA:   3'- -CGCU---UUGAGGU--GCGGG---CCGugGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 40947 0.66 0.867989
Target:  5'- gGCGucgcGACUCgCuuGCCCaGCACCGGu- -3'
miRNA:   3'- -CGCu---UUGAG-GugCGGGcCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 189462 0.66 0.867287
Target:  5'- cGCGAcgAAgUCUcgucggaucgcuuGCgGCCuCGGCGCUGGGUa -3'
miRNA:   3'- -CGCU--UUgAGG-------------UG-CGG-GCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 194659 0.66 0.865879
Target:  5'- cGCGGGACgCCACGCaaCGGCagugcgcacaaagcGCCGGa- -3'
miRNA:   3'- -CGCUUUGaGGUGCGg-GCCG--------------UGGCCca -5'
29894 5' -59.7 NC_006273.1 + 234597 0.66 0.865879
Target:  5'- cGCGGGACgCCACGCaaCGGCagugcgcacaaagcGCCGGa- -3'
miRNA:   3'- -CGCUUUGaGGUGCGg-GCCG--------------UGGCCca -5'
29894 5' -59.7 NC_006273.1 + 79600 0.66 0.860889
Target:  5'- gGC-AGGgUCCACGggguacucgccaCCCGGCACCagcaGGGUg -3'
miRNA:   3'- -CGcUUUgAGGUGC------------GGGCCGUGG----CCCA- -5'
29894 5' -59.7 NC_006273.1 + 233691 0.66 0.853606
Target:  5'- gGCGGAuUUCCGCGCggGGgACgGGGUa -3'
miRNA:   3'- -CGCUUuGAGGUGCGggCCgUGgCCCA- -5'
29894 5' -59.7 NC_006273.1 + 145161 0.66 0.853606
Target:  5'- aCGAAAa--CACGCCCGaGCuGCUGGGc -3'
miRNA:   3'- cGCUUUgagGUGCGGGC-CG-UGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 30594 0.66 0.853606
Target:  5'- cGCGAGAC-CgGCgGCaCCGGCGCCGc-- -3'
miRNA:   3'- -CGCUUUGaGgUG-CG-GGCCGUGGCcca -5'
29894 5' -59.7 NC_006273.1 + 129584 0.66 0.853606
Target:  5'- gGCG--GCUCCGCuauGCC--GCGCCGGGUu -3'
miRNA:   3'- -CGCuuUGAGGUG---CGGgcCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 86727 0.66 0.853606
Target:  5'- cGCGcAGAcCUCCAgGCCggccucCGGCGCCaGGa -3'
miRNA:   3'- -CGC-UUU-GAGGUgCGG------GCCGUGGcCCa -5'
29894 5' -59.7 NC_006273.1 + 2182 0.66 0.849151
Target:  5'- cCGuccAACUUCACGCCgaaacgacccgcacaUGGCGCUGGGc -3'
miRNA:   3'- cGCu--UUGAGGUGCGG---------------GCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 197289 0.66 0.846145
Target:  5'- gGCGcGAgUCgGCGCCCGcCGCCGaGGc -3'
miRNA:   3'- -CGCuUUgAGgUGCGGGCcGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 45948 0.66 0.846145
Target:  5'- aCGAcgAGCUCCgucacaGCGaCCCGGCGCCGc-- -3'
miRNA:   3'- cGCU--UUGAGG------UGC-GGGCCGUGGCcca -5'
29894 5' -59.7 NC_006273.1 + 2396 0.66 0.846145
Target:  5'- gGCGcGAgUCgGCGCCCGcCGCCGaGGc -3'
miRNA:   3'- -CGCuUUgAGgUGCGGGCcGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 47975 0.66 0.843873
Target:  5'- aCGAAcCaCCACGCCCGcGUccacguacaccucgGCCGGGa -3'
miRNA:   3'- cGCUUuGaGGUGCGGGC-CG--------------UGGCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.