Results 21 - 40 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29894 | 5' | -59.7 | NC_006273.1 | + | 164270 | 0.72 | 0.554724 |
Target: 5'- gGCGAAACUgg-UGCUggCGGCGCCGGGUg -3' miRNA: 3'- -CGCUUUGAgguGCGG--GCCGUGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 183721 | 0.72 | 0.517383 |
Target: 5'- cCGggGCUCagccuucuCACGCuCCGGCGCaaCGGGUg -3' miRNA: 3'- cGCuuUGAG--------GUGCG-GGCCGUG--GCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 45934 | 0.72 | 0.53594 |
Target: 5'- aCGAGACUUCGuCGCgaggCCGGCucCCGGGUg -3' miRNA: 3'- cGCUUUGAGGU-GCG----GGCCGu-GGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 234411 | 0.72 | 0.517383 |
Target: 5'- aGCGuAACUCC-CGUuaCCGGCGCCGGc- -3' miRNA: 3'- -CGCuUUGAGGuGCG--GGCCGUGGCCca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 196005 | 0.71 | 0.592817 |
Target: 5'- cGCGA---UCCACGCCuCGuccuCGCCGGGUa -3' miRNA: 3'- -CGCUuugAGGUGCGG-GCc---GUGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 189407 | 0.71 | 0.592817 |
Target: 5'- uGCGggGCUUCuuggaauCGUgaagCGGCGCCGGGUc -3' miRNA: 3'- -CGCuuUGAGGu------GCGg---GCCGUGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 177030 | 0.7 | 0.640955 |
Target: 5'- cGCGGcuCUCCAuCGCCagCGcGCGCUGGGa -3' miRNA: 3'- -CGCUuuGAGGU-GCGG--GC-CGUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 2367 | 0.7 | 0.669816 |
Target: 5'- cGCGGGcguGCUggGCGCgCUGGCGCUGGGg -3' miRNA: 3'- -CGCUU---UGAggUGCG-GGCCGUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 93628 | 0.7 | 0.640955 |
Target: 5'- uGCGcAGCUUCGCGCauccaCUGGCGCCGGc- -3' miRNA: 3'- -CGCuUUGAGGUGCG-----GGCCGUGGCCca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 48578 | 0.7 | 0.660213 |
Target: 5'- -aGggGCggCAUGCCguuggCGGCGCCGGGa -3' miRNA: 3'- cgCuuUGagGUGCGG-----GCCGUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 78505 | 0.7 | 0.660213 |
Target: 5'- -aGGAAC-CCugcggcgcCGCCCGGaCACCGGGc -3' miRNA: 3'- cgCUUUGaGGu-------GCGGGCC-GUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 182790 | 0.7 | 0.669816 |
Target: 5'- uGCGAGGCUCUcaaaaAgGCCCugcggaGGCACCGGu- -3' miRNA: 3'- -CGCUUUGAGG-----UgCGGG------CCGUGGCCca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 197260 | 0.7 | 0.669816 |
Target: 5'- cGCGGGcguGCUggGCGCgCUGGCGCUGGGg -3' miRNA: 3'- -CGCUU---UGAggUGCG-GGCCGUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 230534 | 0.7 | 0.640955 |
Target: 5'- gGCGGGACUUagcCGCCCGugGCCGGGa -3' miRNA: 3'- -CGCUUUGAGgu-GCGGGCcgUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 21837 | 0.7 | 0.669816 |
Target: 5'- ----uGCUCUGCGCUaCGGCGCUGGGa -3' miRNA: 3'- cgcuuUGAGGUGCGG-GCCGUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 196382 | 0.69 | 0.688932 |
Target: 5'- cGCGcaggacGGACUguaCCugGCGCUgGGCGCCGGGUu -3' miRNA: 3'- -CGC------UUUGA---GG--UGCGGgCCGUGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 39475 | 0.69 | 0.726601 |
Target: 5'- cGCGGAACagcgCCAacUGCUgGGCACCGuGGc -3' miRNA: 3'- -CGCUUUGa---GGU--GCGGgCCGUGGC-CCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 61410 | 0.69 | 0.726601 |
Target: 5'- uGCGGAugaGCagCGCGCCCGGCugCGc-- -3' miRNA: 3'- -CGCUU---UGagGUGCGGGCCGugGCcca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 42916 | 0.69 | 0.735857 |
Target: 5'- aGCGcgcGCUCCACGauCUCGGCAUCGuGGc -3' miRNA: 3'- -CGCuu-UGAGGUGC--GGGCCGUGGC-CCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 164648 | 0.69 | 0.688932 |
Target: 5'- gGCGGAcacagauaGCUCCAgcguguacgUGCUCgGGUGCCGGGUa -3' miRNA: 3'- -CGCUU--------UGAGGU---------GCGGG-CCGUGGCCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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