Results 61 - 80 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29894 | 5' | -59.7 | NC_006273.1 | + | 155760 | 0.67 | 0.806376 |
Target: 5'- cUGcuACUCCAC-CCUgcuGGUGCCGGGUg -3' miRNA: 3'- cGCuuUGAGGUGcGGG---CCGUGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 160556 | 0.67 | 0.822752 |
Target: 5'- cGCGGAGC-CCGCGgCUGGUACgaGcGGUg -3' miRNA: 3'- -CGCUUUGaGGUGCgGGCCGUGg-C-CCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 205902 | 0.67 | 0.837739 |
Target: 5'- aCG-AGCUCCACaggggaacccaagGCacgaGGCACCGGGg -3' miRNA: 3'- cGCuUUGAGGUG-------------CGgg--CCGUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 29787 | 0.67 | 0.797975 |
Target: 5'- cGCGcAAACUCCAUGa--GGUugCGGGc -3' miRNA: 3'- -CGC-UUUGAGGUGCgggCCGugGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 67997 | 0.67 | 0.822752 |
Target: 5'- gGCGAcGCUCU--GCCCGGCGgcgucaUGGGUg -3' miRNA: 3'- -CGCUuUGAGGugCGGGCCGUg-----GCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 204675 | 0.67 | 0.822752 |
Target: 5'- cGCGAGACUUUAgGCgacuugCCGGCcUUGGGUg -3' miRNA: 3'- -CGCUUUGAGGUgCG------GGCCGuGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 47333 | 0.67 | 0.822752 |
Target: 5'- aCGAGAC-CCGCGCcgCCGGCGCUGu-- -3' miRNA: 3'- cGCUUUGaGGUGCG--GGCCGUGGCcca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 133820 | 0.67 | 0.830712 |
Target: 5'- aGCGcGAACgCCGCGCCCGucGCGCaCGGc- -3' miRNA: 3'- -CGC-UUUGaGGUGCGGGC--CGUG-GCCca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 81393 | 0.67 | 0.838512 |
Target: 5'- aGCGGcuCUCCAgCGCCuCGGuCugCGuGGg -3' miRNA: 3'- -CGCUuuGAGGU-GCGG-GCC-GugGC-CCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 101972 | 0.67 | 0.830712 |
Target: 5'- cGCGucgcuuGACggCCACGCagcaGGCGCCGuGGg -3' miRNA: 3'- -CGCu-----UUGa-GGUGCGgg--CCGUGGC-CCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 21638 | 0.67 | 0.838512 |
Target: 5'- aCGAGAC-CCACaGCCUGGCgACCGa-- -3' miRNA: 3'- cGCUUUGaGGUG-CGGGCCG-UGGCcca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 38183 | 0.67 | 0.822752 |
Target: 5'- gGCGGGACgccgagcCCGCGCCgCGGCcgcucauCCGGa- -3' miRNA: 3'- -CGCUUUGa------GGUGCGG-GCCGu------GGCCca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 144391 | 0.67 | 0.797975 |
Target: 5'- aCGAGGcCUUCGucagcggcugucUGCCCGGCGCCGcGGc -3' miRNA: 3'- cGCUUU-GAGGU------------GCGGGCCGUGGC-CCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 130927 | 0.67 | 0.806376 |
Target: 5'- cGCGu--CUCaugUACGCUCGGUACgGGGa -3' miRNA: 3'- -CGCuuuGAG---GUGCGGGCCGUGgCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 200929 | 0.67 | 0.806376 |
Target: 5'- cCGGGACUUuucaCACGgugauUUCGGCACCGGGa -3' miRNA: 3'- cGCUUUGAG----GUGC-----GGGCCGUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 45876 | 0.67 | 0.822752 |
Target: 5'- cUGGAACUCuCACacaGCgCGGCGgCCGGGc -3' miRNA: 3'- cGCUUUGAG-GUG---CGgGCCGU-GGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 46853 | 0.67 | 0.822752 |
Target: 5'- gGCGugcuaAAACgagCgCugGUCCGGCugcACCGGGUa -3' miRNA: 3'- -CGC-----UUUGa--G-GugCGGGCCG---UGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 21817 | 0.67 | 0.822752 |
Target: 5'- cGCGu-AgUCCACuacaucCCCGGCACCucGGGUc -3' miRNA: 3'- -CGCuuUgAGGUGc-----GGGCCGUGG--CCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 50323 | 0.67 | 0.797975 |
Target: 5'- aUGAGA--CCACGUcgCCGGCGCCGGuGUu -3' miRNA: 3'- cGCUUUgaGGUGCG--GGCCGUGGCC-CA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 149410 | 0.66 | 0.8749 |
Target: 5'- -gGAGAUUCgACGUCCgcugcccgauGGCACgGGGg -3' miRNA: 3'- cgCUUUGAGgUGCGGG----------CCGUGgCCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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