miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29894 5' -59.7 NC_006273.1 + 90578 1.09 0.002219
Target:  5'- cGCGAAACUCCACGCCCGGCACCGGGUg -3'
miRNA:   3'- -CGCUUUGAGGUGCGGGCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 141258 0.77 0.314992
Target:  5'- cGCGA--C-CCAUGCCCGGCACgGGGc -3'
miRNA:   3'- -CGCUuuGaGGUGCGGGCCGUGgCCCa -5'
29894 5' -59.7 NC_006273.1 + 140993 0.76 0.32184
Target:  5'- cCGGAGCgggCCGCGCCCGGUGCCcGGc -3'
miRNA:   3'- cGCUUUGa--GGUGCGGGCCGUGGcCCa -5'
29894 5' -59.7 NC_006273.1 + 141459 0.76 0.349604
Target:  5'- cGCGGG--UCCugGCCCGcgcaugcGCACCGGGUc -3'
miRNA:   3'- -CGCUUugAGGugCGGGC-------CGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 151969 0.75 0.37286
Target:  5'- cGCGGAugUCC-CGCUCGGgcgcCGCCGGGc -3'
miRNA:   3'- -CGCUUugAGGuGCGGGCC----GUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 3625 0.75 0.380583
Target:  5'- aUGAgcAAUUCCuCGCCCGGCGCCGGc- -3'
miRNA:   3'- cGCU--UUGAGGuGCGGGCCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 233879 0.75 0.380583
Target:  5'- cGCGGAACcCgGCGCCCaGCGCCaGGUa -3'
miRNA:   3'- -CGCUUUGaGgUGCGGGcCGUGGcCCA- -5'
29894 5' -59.7 NC_006273.1 + 38986 0.75 0.380583
Target:  5'- cGCGGAACcCgGCGCCCaGCGCCaGGUa -3'
miRNA:   3'- -CGCUUUGaGgUGCGGGcCGUGGcCCA- -5'
29894 5' -59.7 NC_006273.1 + 11845 0.74 0.437541
Target:  5'- aGUGccGCUCCACGCCgCGGCACCa--- -3'
miRNA:   3'- -CGCuuUGAGGUGCGG-GCCGUGGccca -5'
29894 5' -59.7 NC_006273.1 + 147475 0.74 0.437541
Target:  5'- cGCGGgcAACUCCAuuugcuucggcgUGCCCGGCGagaCGGGa -3'
miRNA:   3'- -CGCU--UUGAGGU------------GCGGGCCGUg--GCCCa -5'
29894 5' -59.7 NC_006273.1 + 210628 0.74 0.443503
Target:  5'- cGCGggGCUCCugGCaggcacacgugacaCCuaGCGCCGGGa -3'
miRNA:   3'- -CGCuuUGAGGugCG--------------GGc-CGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 141048 0.74 0.446072
Target:  5'- gGUGGGACgggcCCGCGgacggaCCGGCGCCGGGc -3'
miRNA:   3'- -CGCUUUGa---GGUGCg-----GGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 90967 0.74 0.454694
Target:  5'- cCGAAcCgUCCGcCGCCgCGGCGCCGGGc -3'
miRNA:   3'- cGCUUuG-AGGU-GCGG-GCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 47240 0.73 0.463405
Target:  5'- cCGGAACUCgGCGaCCCGGCccGCCGGc- -3'
miRNA:   3'- cGCUUUGAGgUGC-GGGCCG--UGGCCca -5'
29894 5' -59.7 NC_006273.1 + 37988 0.73 0.480194
Target:  5'- cGUGcgGCUCgCGCGCCCacagcgcGGCGCgCGGGUg -3'
miRNA:   3'- -CGCuuUGAG-GUGCGGG-------CCGUG-GCCCA- -5'
29894 5' -59.7 NC_006273.1 + 232881 0.73 0.480194
Target:  5'- cGUGcgGCUCgCGCGCCCacagcgcGGCGCgCGGGUg -3'
miRNA:   3'- -CGCuuUGAG-GUGCGGG-------CCGUG-GCCCA- -5'
29894 5' -59.7 NC_006273.1 + 36646 0.73 0.481086
Target:  5'- uGCGGGAa--CugGCCUGGCGgCGGGUa -3'
miRNA:   3'- -CGCUUUgagGugCGGGCCGUgGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 216837 0.73 0.481086
Target:  5'- cGCGAAAgUCCGCGgCCGGCAUguGGUc -3'
miRNA:   3'- -CGCUUUgAGGUGCgGGCCGUGgcCCA- -5'
29894 5' -59.7 NC_006273.1 + 212667 0.73 0.490048
Target:  5'- gGCGAcGCUCCAUG-CCGGCGCCugacGGUc -3'
miRNA:   3'- -CGCUuUGAGGUGCgGGCCGUGGc---CCA- -5'
29894 5' -59.7 NC_006273.1 + 194473 0.72 0.517383
Target:  5'- aGCGuAACUCC-CGUuaCCGGCGCCGGc- -3'
miRNA:   3'- -CGCuUUGAGGuGCG--GGCCGUGGCCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.