Results 41 - 60 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29894 | 5' | -59.7 | NC_006273.1 | + | 42916 | 0.69 | 0.735857 |
Target: 5'- aGCGcgcGCUCCACGauCUCGGCAUCGuGGc -3' miRNA: 3'- -CGCuu-UGAGGUGC--GGGCCGUGGC-CCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 94367 | 0.68 | 0.745032 |
Target: 5'- cUGGAGCaCCAUccggggccguggGCCgGGCACCGGGc -3' miRNA: 3'- cGCUUUGaGGUG------------CGGgCCGUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 122207 | 0.68 | 0.745032 |
Target: 5'- cGCGcGACUCCAUGCugCCuGCGCguaCGGGUg -3' miRNA: 3'- -CGCuUUGAGGUGCG--GGcCGUG---GCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 160866 | 0.68 | 0.748679 |
Target: 5'- aCGGAA-UCCugGagggaaaagacgagCCGGCGCCGGGUa -3' miRNA: 3'- cGCUUUgAGGugCg-------------GGCCGUGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 147419 | 0.68 | 0.75412 |
Target: 5'- gGCGucGGCgCgGCGUCCGGCGUCGGGg -3' miRNA: 3'- -CGCu-UUGaGgUGCGGGCCGUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 162925 | 0.68 | 0.762218 |
Target: 5'- uGCGAcacGugUCCGCGauaCCuggugccguugcgGGCACUGGGUc -3' miRNA: 3'- -CGCU---UugAGGUGCg--GG-------------CCGUGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 196223 | 0.68 | 0.763113 |
Target: 5'- uCGGAGCaccgCCGCaGCCCGGCuuucCCGGcGUc -3' miRNA: 3'- cGCUUUGa---GGUG-CGGGCCGu---GGCC-CA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 21912 | 0.68 | 0.772002 |
Target: 5'- cGCGGAcaacaACUgCAgcCG-CCGGCAUCGGGUa -3' miRNA: 3'- -CGCUU-----UGAgGU--GCgGGCCGUGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 195935 | 0.68 | 0.772002 |
Target: 5'- gGCGAcg--CCGgGCCaCGGCguccACCGGGUa -3' miRNA: 3'- -CGCUuugaGGUgCGG-GCCG----UGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 134549 | 0.68 | 0.772002 |
Target: 5'- cCGAGAgUCUACGUCUGGCACCc--- -3' miRNA: 3'- cGCUUUgAGGUGCGGGCCGUGGccca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 1042 | 0.68 | 0.772002 |
Target: 5'- gGCGAcg--CCGgGCCaCGGCguccACCGGGUa -3' miRNA: 3'- -CGCUuugaGGUgCGG-GCCG----UGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 151640 | 0.68 | 0.78078 |
Target: 5'- -gGAAGCguUCCAgCGaCUCGGUGCCGGGc -3' miRNA: 3'- cgCUUUG--AGGU-GC-GGGCCGUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 117812 | 0.68 | 0.78078 |
Target: 5'- gGCGAAGCagaaggaggggCCGCua-CGGCGCCGGGa -3' miRNA: 3'- -CGCUUUGa----------GGUGcggGCCGUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 87297 | 0.68 | 0.78078 |
Target: 5'- uGUGGu-UUCCACGCCCaGUGCCGGu- -3' miRNA: 3'- -CGCUuuGAGGUGCGGGcCGUGGCCca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 142342 | 0.68 | 0.789441 |
Target: 5'- cGCGGAAagUCaggacaGCGCCgUGGCAUCGGGc -3' miRNA: 3'- -CGCUUUg-AGg-----UGCGG-GCCGUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 233666 | 0.68 | 0.789441 |
Target: 5'- gGCGcAGCUCC-CGUCCGaGCGCCGu-- -3' miRNA: 3'- -CGCuUUGAGGuGCGGGC-CGUGGCcca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 197494 | 0.68 | 0.789441 |
Target: 5'- uGCGAGAcCUgCGCgagGCCCGGCGCCa--- -3' miRNA: 3'- -CGCUUU-GAgGUG---CGGGCCGUGGccca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 170038 | 0.68 | 0.789441 |
Target: 5'- uGCuGGGCgCCACGCCaggagGGCAacCCGGGUc -3' miRNA: 3'- -CGcUUUGaGGUGCGGg----CCGU--GGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 38774 | 0.68 | 0.789441 |
Target: 5'- gGCGcAGCUCC-CGUCCGaGCGCCGu-- -3' miRNA: 3'- -CGCuUUGAGGuGCGGGC-CGUGGCcca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 6266 | 0.68 | 0.789441 |
Target: 5'- gGCGAAACaaCCAgCGCCgGGUACUGuGGc -3' miRNA: 3'- -CGCUUUGa-GGU-GCGGgCCGUGGC-CCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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