miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29894 5' -59.7 NC_006273.1 + 81393 0.67 0.838512
Target:  5'- aGCGGcuCUCCAgCGCCuCGGuCugCGuGGg -3'
miRNA:   3'- -CGCUuuGAGGU-GCGG-GCC-GugGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 21638 0.67 0.838512
Target:  5'- aCGAGAC-CCACaGCCUGGCgACCGa-- -3'
miRNA:   3'- cGCUUUGaGGUG-CGGGCCG-UGGCcca -5'
29894 5' -59.7 NC_006273.1 + 205902 0.67 0.837739
Target:  5'- aCG-AGCUCCACaggggaacccaagGCacgaGGCACCGGGg -3'
miRNA:   3'- cGCuUUGAGGUG-------------CGgg--CCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 101972 0.67 0.830712
Target:  5'- cGCGucgcuuGACggCCACGCagcaGGCGCCGuGGg -3'
miRNA:   3'- -CGCu-----UUGa-GGUGCGgg--CCGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 133820 0.67 0.830712
Target:  5'- aGCGcGAACgCCGCGCCCGucGCGCaCGGc- -3'
miRNA:   3'- -CGC-UUUGaGGUGCGGGC--CGUG-GCCca -5'
29894 5' -59.7 NC_006273.1 + 47333 0.67 0.822752
Target:  5'- aCGAGAC-CCGCGCcgCCGGCGCUGu-- -3'
miRNA:   3'- cGCUUUGaGGUGCG--GGCCGUGGCcca -5'
29894 5' -59.7 NC_006273.1 + 160556 0.67 0.822752
Target:  5'- cGCGGAGC-CCGCGgCUGGUACgaGcGGUg -3'
miRNA:   3'- -CGCUUUGaGGUGCgGGCCGUGg-C-CCA- -5'
29894 5' -59.7 NC_006273.1 + 204675 0.67 0.822752
Target:  5'- cGCGAGACUUUAgGCgacuugCCGGCcUUGGGUg -3'
miRNA:   3'- -CGCUUUGAGGUgCG------GGCCGuGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 38183 0.67 0.822752
Target:  5'- gGCGGGACgccgagcCCGCGCCgCGGCcgcucauCCGGa- -3'
miRNA:   3'- -CGCUUUGa------GGUGCGG-GCCGu------GGCCca -5'
29894 5' -59.7 NC_006273.1 + 21817 0.67 0.822752
Target:  5'- cGCGu-AgUCCACuacaucCCCGGCACCucGGGUc -3'
miRNA:   3'- -CGCuuUgAGGUGc-----GGGCCGUGG--CCCA- -5'
29894 5' -59.7 NC_006273.1 + 67997 0.67 0.822752
Target:  5'- gGCGAcGCUCU--GCCCGGCGgcgucaUGGGUg -3'
miRNA:   3'- -CGCUuUGAGGugCGGGCCGUg-----GCCCA- -5'
29894 5' -59.7 NC_006273.1 + 45876 0.67 0.822752
Target:  5'- cUGGAACUCuCACacaGCgCGGCGgCCGGGc -3'
miRNA:   3'- cGCUUUGAG-GUG---CGgGCCGU-GGCCCa -5'
29894 5' -59.7 NC_006273.1 + 46853 0.67 0.822752
Target:  5'- gGCGugcuaAAACgagCgCugGUCCGGCugcACCGGGUa -3'
miRNA:   3'- -CGC-----UUUGa--G-GugCGGGCCG---UGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 200929 0.67 0.806376
Target:  5'- cCGGGACUUuucaCACGgugauUUCGGCACCGGGa -3'
miRNA:   3'- cGCUUUGAG----GUGC-----GGGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 130927 0.67 0.806376
Target:  5'- cGCGu--CUCaugUACGCUCGGUACgGGGa -3'
miRNA:   3'- -CGCuuuGAG---GUGCGGGCCGUGgCCCa -5'
29894 5' -59.7 NC_006273.1 + 155760 0.67 0.806376
Target:  5'- cUGcuACUCCAC-CCUgcuGGUGCCGGGUg -3'
miRNA:   3'- cGCuuUGAGGUGcGGG---CCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 144391 0.67 0.797975
Target:  5'- aCGAGGcCUUCGucagcggcugucUGCCCGGCGCCGcGGc -3'
miRNA:   3'- cGCUUU-GAGGU------------GCGGGCCGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 50323 0.67 0.797975
Target:  5'- aUGAGA--CCACGUcgCCGGCGCCGGuGUu -3'
miRNA:   3'- cGCUUUgaGGUGCG--GGCCGUGGCC-CA- -5'
29894 5' -59.7 NC_006273.1 + 29787 0.67 0.797975
Target:  5'- cGCGcAAACUCCAUGa--GGUugCGGGc -3'
miRNA:   3'- -CGC-UUUGAGGUGCgggCCGugGCCCa -5'
29894 5' -59.7 NC_006273.1 + 170038 0.68 0.789441
Target:  5'- uGCuGGGCgCCACGCCaggagGGCAacCCGGGUc -3'
miRNA:   3'- -CGcUUUGaGGUGCGGg----CCGU--GGCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.