miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29894 5' -59.7 NC_006273.1 + 38774 0.68 0.789441
Target:  5'- gGCGcAGCUCC-CGUCCGaGCGCCGu-- -3'
miRNA:   3'- -CGCuUUGAGGuGCGGGC-CGUGGCcca -5'
29894 5' -59.7 NC_006273.1 + 6266 0.68 0.789441
Target:  5'- gGCGAAACaaCCAgCGCCgGGUACUGuGGc -3'
miRNA:   3'- -CGCUUUGa-GGU-GCGGgCCGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 142342 0.68 0.789441
Target:  5'- cGCGGAAagUCaggacaGCGCCgUGGCAUCGGGc -3'
miRNA:   3'- -CGCUUUg-AGg-----UGCGG-GCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 233666 0.68 0.789441
Target:  5'- gGCGcAGCUCC-CGUCCGaGCGCCGu-- -3'
miRNA:   3'- -CGCuUUGAGGuGCGGGC-CGUGGCcca -5'
29894 5' -59.7 NC_006273.1 + 170038 0.68 0.789441
Target:  5'- uGCuGGGCgCCACGCCaggagGGCAacCCGGGUc -3'
miRNA:   3'- -CGcUUUGaGGUGCGGg----CCGU--GGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 117812 0.68 0.78078
Target:  5'- gGCGAAGCagaaggaggggCCGCua-CGGCGCCGGGa -3'
miRNA:   3'- -CGCUUUGa----------GGUGcggGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 151640 0.68 0.78078
Target:  5'- -gGAAGCguUCCAgCGaCUCGGUGCCGGGc -3'
miRNA:   3'- cgCUUUG--AGGU-GC-GGGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 87297 0.68 0.78078
Target:  5'- uGUGGu-UUCCACGCCCaGUGCCGGu- -3'
miRNA:   3'- -CGCUuuGAGGUGCGGGcCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 1042 0.68 0.772002
Target:  5'- gGCGAcg--CCGgGCCaCGGCguccACCGGGUa -3'
miRNA:   3'- -CGCUuugaGGUgCGG-GCCG----UGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 21912 0.68 0.772002
Target:  5'- cGCGGAcaacaACUgCAgcCG-CCGGCAUCGGGUa -3'
miRNA:   3'- -CGCUU-----UGAgGU--GCgGGCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 195935 0.68 0.772002
Target:  5'- gGCGAcg--CCGgGCCaCGGCguccACCGGGUa -3'
miRNA:   3'- -CGCUuugaGGUgCGG-GCCG----UGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 134549 0.68 0.772002
Target:  5'- cCGAGAgUCUACGUCUGGCACCc--- -3'
miRNA:   3'- cGCUUUgAGGUGCGGGCCGUGGccca -5'
29894 5' -59.7 NC_006273.1 + 196223 0.68 0.763113
Target:  5'- uCGGAGCaccgCCGCaGCCCGGCuuucCCGGcGUc -3'
miRNA:   3'- cGCUUUGa---GGUG-CGGGCCGu---GGCC-CA- -5'
29894 5' -59.7 NC_006273.1 + 162925 0.68 0.762218
Target:  5'- uGCGAcacGugUCCGCGauaCCuggugccguugcgGGCACUGGGUc -3'
miRNA:   3'- -CGCU---UugAGGUGCg--GG-------------CCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 147419 0.68 0.75412
Target:  5'- gGCGucGGCgCgGCGUCCGGCGUCGGGg -3'
miRNA:   3'- -CGCu-UUGaGgUGCGGGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 160866 0.68 0.748679
Target:  5'- aCGGAA-UCCugGagggaaaagacgagCCGGCGCCGGGUa -3'
miRNA:   3'- cGCUUUgAGGugCg-------------GGCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 94367 0.68 0.745032
Target:  5'- cUGGAGCaCCAUccggggccguggGCCgGGCACCGGGc -3'
miRNA:   3'- cGCUUUGaGGUG------------CGGgCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 122207 0.68 0.745032
Target:  5'- cGCGcGACUCCAUGCugCCuGCGCguaCGGGUg -3'
miRNA:   3'- -CGCuUUGAGGUGCG--GGcCGUG---GCCCA- -5'
29894 5' -59.7 NC_006273.1 + 42916 0.69 0.735857
Target:  5'- aGCGcgcGCUCCACGauCUCGGCAUCGuGGc -3'
miRNA:   3'- -CGCuu-UGAGGUGC--GGGCCGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 61410 0.69 0.726601
Target:  5'- uGCGGAugaGCagCGCGCCCGGCugCGc-- -3'
miRNA:   3'- -CGCUU---UGagGUGCGGGCCGugGCcca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.