miRNA display CGI


Results 61 - 80 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29894 5' -59.7 NC_006273.1 + 61410 0.69 0.726601
Target:  5'- uGCGGAugaGCagCGCGCCCGGCugCGc-- -3'
miRNA:   3'- -CGCUU---UGagGUGCGGGCCGugGCcca -5'
29894 5' -59.7 NC_006273.1 + 1489 0.69 0.688932
Target:  5'- cGCGcaggacGGACUguaCCugGCGCUgGGCGCCGGGUu -3'
miRNA:   3'- -CGC------UUUGA---GG--UGCGGgCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 164648 0.69 0.688932
Target:  5'- gGCGGAcacagauaGCUCCAgcguguacgUGCUCgGGUGCCGGGUa -3'
miRNA:   3'- -CGCUU--------UGAGGU---------GCGGG-CCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 196382 0.69 0.688932
Target:  5'- cGCGcaggacGGACUguaCCugGCGCUgGGCGCCGGGUu -3'
miRNA:   3'- -CGC------UUUGA---GG--UGCGGgCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 2367 0.7 0.669816
Target:  5'- cGCGGGcguGCUggGCGCgCUGGCGCUGGGg -3'
miRNA:   3'- -CGCUU---UGAggUGCG-GGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 182790 0.7 0.669816
Target:  5'- uGCGAGGCUCUcaaaaAgGCCCugcggaGGCACCGGu- -3'
miRNA:   3'- -CGCUUUGAGG-----UgCGGG------CCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 21837 0.7 0.669816
Target:  5'- ----uGCUCUGCGCUaCGGCGCUGGGa -3'
miRNA:   3'- cgcuuUGAGGUGCGG-GCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 197260 0.7 0.669816
Target:  5'- cGCGGGcguGCUggGCGCgCUGGCGCUGGGg -3'
miRNA:   3'- -CGCUU---UGAggUGCG-GGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 48578 0.7 0.660213
Target:  5'- -aGggGCggCAUGCCguuggCGGCGCCGGGa -3'
miRNA:   3'- cgCuuUGagGUGCGG-----GCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 78505 0.7 0.660213
Target:  5'- -aGGAAC-CCugcggcgcCGCCCGGaCACCGGGc -3'
miRNA:   3'- cgCUUUGaGGu-------GCGGGCC-GUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 177030 0.7 0.640955
Target:  5'- cGCGGcuCUCCAuCGCCagCGcGCGCUGGGa -3'
miRNA:   3'- -CGCUuuGAGGU-GCGG--GC-CGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 93628 0.7 0.640955
Target:  5'- uGCGcAGCUUCGCGCauccaCUGGCGCCGGc- -3'
miRNA:   3'- -CGCuUUGAGGUGCG-----GGCCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 230534 0.7 0.640955
Target:  5'- gGCGGGACUUagcCGCCCGugGCCGGGa -3'
miRNA:   3'- -CGCUUUGAGgu-GCGGGCcgUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 196005 0.71 0.592817
Target:  5'- cGCGA---UCCACGCCuCGuccuCGCCGGGUa -3'
miRNA:   3'- -CGCUuugAGGUGCGG-GCc---GUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 189407 0.71 0.592817
Target:  5'- uGCGggGCUUCuuggaauCGUgaagCGGCGCCGGGUc -3'
miRNA:   3'- -CGCuuUGAGGu------GCGg---GCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 164270 0.72 0.554724
Target:  5'- gGCGAAACUgg-UGCUggCGGCGCCGGGUg -3'
miRNA:   3'- -CGCUUUGAgguGCGG--GCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 45934 0.72 0.53594
Target:  5'- aCGAGACUUCGuCGCgaggCCGGCucCCGGGUg -3'
miRNA:   3'- cGCUUUGAGGU-GCG----GGCCGu-GGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 234411 0.72 0.517383
Target:  5'- aGCGuAACUCC-CGUuaCCGGCGCCGGc- -3'
miRNA:   3'- -CGCuUUGAGGuGCG--GGCCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 183721 0.72 0.517383
Target:  5'- cCGggGCUCagccuucuCACGCuCCGGCGCaaCGGGUg -3'
miRNA:   3'- cGCuuUGAG--------GUGCG-GGCCGUG--GCCCA- -5'
29894 5' -59.7 NC_006273.1 + 194473 0.72 0.517383
Target:  5'- aGCGuAACUCC-CGUuaCCGGCGCCGGc- -3'
miRNA:   3'- -CGCuUUGAGGuGCG--GGCCGUGGCCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.