miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29894 5' -59.7 NC_006273.1 + 1042 0.68 0.772002
Target:  5'- gGCGAcg--CCGgGCCaCGGCguccACCGGGUa -3'
miRNA:   3'- -CGCUuugaGGUgCGG-GCCG----UGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 1489 0.69 0.688932
Target:  5'- cGCGcaggacGGACUguaCCugGCGCUgGGCGCCGGGUu -3'
miRNA:   3'- -CGC------UUUGA---GG--UGCGGgCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 2182 0.66 0.849151
Target:  5'- cCGuccAACUUCACGCCgaaacgacccgcacaUGGCGCUGGGc -3'
miRNA:   3'- cGCu--UUGAGGUGCGG---------------GCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 2367 0.7 0.669816
Target:  5'- cGCGGGcguGCUggGCGCgCUGGCGCUGGGg -3'
miRNA:   3'- -CGCUU---UGAggUGCG-GGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 2396 0.66 0.846145
Target:  5'- gGCGcGAgUCgGCGCCCGcCGCCGaGGc -3'
miRNA:   3'- -CGCuUUgAGgUGCGGGCcGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 3625 0.75 0.380583
Target:  5'- aUGAgcAAUUCCuCGCCCGGCGCCGGc- -3'
miRNA:   3'- cGCU--UUGAGGuGCGGGCCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 6266 0.68 0.789441
Target:  5'- gGCGAAACaaCCAgCGCCgGGUACUGuGGc -3'
miRNA:   3'- -CGCUUUGa-GGU-GCGGgCCGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 11845 0.74 0.437541
Target:  5'- aGUGccGCUCCACGCCgCGGCACCa--- -3'
miRNA:   3'- -CGCuuUGAGGUGCGG-GCCGUGGccca -5'
29894 5' -59.7 NC_006273.1 + 21638 0.67 0.838512
Target:  5'- aCGAGAC-CCACaGCCUGGCgACCGa-- -3'
miRNA:   3'- cGCUUUGaGGUG-CGGGCCG-UGGCcca -5'
29894 5' -59.7 NC_006273.1 + 21817 0.67 0.822752
Target:  5'- cGCGu-AgUCCACuacaucCCCGGCACCucGGGUc -3'
miRNA:   3'- -CGCuuUgAGGUGc-----GGGCCGUGG--CCCA- -5'
29894 5' -59.7 NC_006273.1 + 21837 0.7 0.669816
Target:  5'- ----uGCUCUGCGCUaCGGCGCUGGGa -3'
miRNA:   3'- cgcuuUGAGGUGCGG-GCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 21912 0.68 0.772002
Target:  5'- cGCGGAcaacaACUgCAgcCG-CCGGCAUCGGGUa -3'
miRNA:   3'- -CGCUU-----UGAgGU--GCgGGCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 29787 0.67 0.797975
Target:  5'- cGCGcAAACUCCAUGa--GGUugCGGGc -3'
miRNA:   3'- -CGC-UUUGAGGUGCgggCCGugGCCCa -5'
29894 5' -59.7 NC_006273.1 + 30594 0.66 0.853606
Target:  5'- cGCGAGAC-CgGCgGCaCCGGCGCCGc-- -3'
miRNA:   3'- -CGCUUUGaGgUG-CG-GGCCGUGGCcca -5'
29894 5' -59.7 NC_006273.1 + 36646 0.73 0.481086
Target:  5'- uGCGGGAa--CugGCCUGGCGgCGGGUa -3'
miRNA:   3'- -CGCUUUgagGugCGGGCCGUgGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 37988 0.73 0.480194
Target:  5'- cGUGcgGCUCgCGCGCCCacagcgcGGCGCgCGGGUg -3'
miRNA:   3'- -CGCuuUGAG-GUGCGGG-------CCGUG-GCCCA- -5'
29894 5' -59.7 NC_006273.1 + 38183 0.67 0.822752
Target:  5'- gGCGGGACgccgagcCCGCGCCgCGGCcgcucauCCGGa- -3'
miRNA:   3'- -CGCUUUGa------GGUGCGG-GCCGu------GGCCca -5'
29894 5' -59.7 NC_006273.1 + 38774 0.68 0.789441
Target:  5'- gGCGcAGCUCC-CGUCCGaGCGCCGu-- -3'
miRNA:   3'- -CGCuUUGAGGuGCGGGC-CGUGGCcca -5'
29894 5' -59.7 NC_006273.1 + 38986 0.75 0.380583
Target:  5'- cGCGGAACcCgGCGCCCaGCGCCaGGUa -3'
miRNA:   3'- -CGCUUUGaGgUGCGGGcCGUGGcCCA- -5'
29894 5' -59.7 NC_006273.1 + 39475 0.69 0.726601
Target:  5'- cGCGGAACagcgCCAacUGCUgGGCACCGuGGc -3'
miRNA:   3'- -CGCUUUGa---GGU--GCGGgCCGUGGC-CCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.