miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29894 5' -59.7 NC_006273.1 + 40947 0.66 0.867989
Target:  5'- gGCGucgcGACUCgCuuGCCCaGCACCGGu- -3'
miRNA:   3'- -CGCu---UUGAG-GugCGGGcCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 42301 0.66 0.867989
Target:  5'- gGCGAuccAGCUCCAgcCGUCCagcGGCugCGuGGg -3'
miRNA:   3'- -CGCU---UUGAGGU--GCGGG---CCGugGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 42916 0.69 0.735857
Target:  5'- aGCGcgcGCUCCACGauCUCGGCAUCGuGGc -3'
miRNA:   3'- -CGCuu-UGAGGUGC--GGGCCGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 45876 0.67 0.822752
Target:  5'- cUGGAACUCuCACacaGCgCGGCGgCCGGGc -3'
miRNA:   3'- cGCUUUGAG-GUG---CGgGCCGU-GGCCCa -5'
29894 5' -59.7 NC_006273.1 + 45934 0.72 0.53594
Target:  5'- aCGAGACUUCGuCGCgaggCCGGCucCCGGGUg -3'
miRNA:   3'- cGCUUUGAGGU-GCG----GGCCGu-GGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 45948 0.66 0.846145
Target:  5'- aCGAcgAGCUCCgucacaGCGaCCCGGCGCCGc-- -3'
miRNA:   3'- cGCU--UUGAGG------UGC-GGGCCGUGGCcca -5'
29894 5' -59.7 NC_006273.1 + 46853 0.67 0.822752
Target:  5'- gGCGugcuaAAACgagCgCugGUCCGGCugcACCGGGUa -3'
miRNA:   3'- -CGC-----UUUGa--G-GugCGGGCCG---UGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 47240 0.73 0.463405
Target:  5'- cCGGAACUCgGCGaCCCGGCccGCCGGc- -3'
miRNA:   3'- cGCUUUGAGgUGC-GGGCCG--UGGCCca -5'
29894 5' -59.7 NC_006273.1 + 47333 0.67 0.822752
Target:  5'- aCGAGAC-CCGCGCcgCCGGCGCUGu-- -3'
miRNA:   3'- cGCUUUGaGGUGCG--GGCCGUGGCcca -5'
29894 5' -59.7 NC_006273.1 + 47975 0.66 0.843873
Target:  5'- aCGAAcCaCCACGCCCGcGUccacguacaccucgGCCGGGa -3'
miRNA:   3'- cGCUUuGaGGUGCGGGC-CG--------------UGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 48578 0.7 0.660213
Target:  5'- -aGggGCggCAUGCCguuggCGGCGCCGGGa -3'
miRNA:   3'- cgCuuUGagGUGCGG-----GCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 50323 0.67 0.797975
Target:  5'- aUGAGA--CCACGUcgCCGGCGCCGGuGUu -3'
miRNA:   3'- cGCUUUgaGGUGCG--GGCCGUGGCC-CA- -5'
29894 5' -59.7 NC_006273.1 + 61410 0.69 0.726601
Target:  5'- uGCGGAugaGCagCGCGCCCGGCugCGc-- -3'
miRNA:   3'- -CGCUU---UGagGUGCGGGCCGugGCcca -5'
29894 5' -59.7 NC_006273.1 + 67997 0.67 0.822752
Target:  5'- gGCGAcGCUCU--GCCCGGCGgcgucaUGGGUg -3'
miRNA:   3'- -CGCUuUGAGGugCGGGCCGUg-----GCCCA- -5'
29894 5' -59.7 NC_006273.1 + 78505 0.7 0.660213
Target:  5'- -aGGAAC-CCugcggcgcCGCCCGGaCACCGGGc -3'
miRNA:   3'- cgCUUUGaGGu-------GCGGGCC-GUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 79600 0.66 0.860889
Target:  5'- gGC-AGGgUCCACGggguacucgccaCCCGGCACCagcaGGGUg -3'
miRNA:   3'- -CGcUUUgAGGUGC------------GGGCCGUGG----CCCA- -5'
29894 5' -59.7 NC_006273.1 + 81393 0.67 0.838512
Target:  5'- aGCGGcuCUCCAgCGCCuCGGuCugCGuGGg -3'
miRNA:   3'- -CGCUuuGAGGU-GCGG-GCC-GugGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 86727 0.66 0.853606
Target:  5'- cGCGcAGAcCUCCAgGCCggccucCGGCGCCaGGa -3'
miRNA:   3'- -CGC-UUU-GAGGUgCGG------GCCGUGGcCCa -5'
29894 5' -59.7 NC_006273.1 + 87297 0.68 0.78078
Target:  5'- uGUGGu-UUCCACGCCCaGUGCCGGu- -3'
miRNA:   3'- -CGCUuuGAGGUGCGGGcCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 90578 1.09 0.002219
Target:  5'- cGCGAAACUCCACGCCCGGCACCGGGUg -3'
miRNA:   3'- -CGCUUUGAGGUGCGGGCCGUGGCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.