miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29894 5' -59.7 NC_006273.1 + 90967 0.74 0.454694
Target:  5'- cCGAAcCgUCCGcCGCCgCGGCGCCGGGc -3'
miRNA:   3'- cGCUUuG-AGGU-GCGG-GCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 93628 0.7 0.640955
Target:  5'- uGCGcAGCUUCGCGCauccaCUGGCGCCGGc- -3'
miRNA:   3'- -CGCuUUGAGGUGCG-----GGCCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 94367 0.68 0.745032
Target:  5'- cUGGAGCaCCAUccggggccguggGCCgGGCACCGGGc -3'
miRNA:   3'- cGCUUUGaGGUG------------CGGgCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 101972 0.67 0.830712
Target:  5'- cGCGucgcuuGACggCCACGCagcaGGCGCCGuGGg -3'
miRNA:   3'- -CGCu-----UUGa-GGUGCGgg--CCGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 117205 0.66 0.8749
Target:  5'- gGCGAcagccgcagucaGGCcgCCACG-CCGGCgGCUGGGg -3'
miRNA:   3'- -CGCU------------UUGa-GGUGCgGGCCG-UGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 117812 0.68 0.78078
Target:  5'- gGCGAAGCagaaggaggggCCGCua-CGGCGCCGGGa -3'
miRNA:   3'- -CGCUUUGa----------GGUGcggGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 122207 0.68 0.745032
Target:  5'- cGCGcGACUCCAUGCugCCuGCGCguaCGGGUg -3'
miRNA:   3'- -CGCuUUGAGGUGCG--GGcCGUG---GCCCA- -5'
29894 5' -59.7 NC_006273.1 + 129584 0.66 0.853606
Target:  5'- gGCG--GCUCCGCuauGCC--GCGCCGGGUu -3'
miRNA:   3'- -CGCuuUGAGGUG---CGGgcCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 130927 0.67 0.806376
Target:  5'- cGCGu--CUCaugUACGCUCGGUACgGGGa -3'
miRNA:   3'- -CGCuuuGAG---GUGCGGGCCGUGgCCCa -5'
29894 5' -59.7 NC_006273.1 + 133820 0.67 0.830712
Target:  5'- aGCGcGAACgCCGCGCCCGucGCGCaCGGc- -3'
miRNA:   3'- -CGC-UUUGaGGUGCGGGC--CGUG-GCCca -5'
29894 5' -59.7 NC_006273.1 + 134549 0.68 0.772002
Target:  5'- cCGAGAgUCUACGUCUGGCACCc--- -3'
miRNA:   3'- cGCUUUgAGGUGCGGGCCGUGGccca -5'
29894 5' -59.7 NC_006273.1 + 140993 0.76 0.32184
Target:  5'- cCGGAGCgggCCGCGCCCGGUGCCcGGc -3'
miRNA:   3'- cGCUUUGa--GGUGCGGGCCGUGGcCCa -5'
29894 5' -59.7 NC_006273.1 + 141048 0.74 0.446072
Target:  5'- gGUGGGACgggcCCGCGgacggaCCGGCGCCGGGc -3'
miRNA:   3'- -CGCUUUGa---GGUGCg-----GGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 141258 0.77 0.314992
Target:  5'- cGCGA--C-CCAUGCCCGGCACgGGGc -3'
miRNA:   3'- -CGCUuuGaGGUGCGGGCCGUGgCCCa -5'
29894 5' -59.7 NC_006273.1 + 141459 0.76 0.349604
Target:  5'- cGCGGG--UCCugGCCCGcgcaugcGCACCGGGUc -3'
miRNA:   3'- -CGCUUugAGGugCGGGC-------CGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 142342 0.68 0.789441
Target:  5'- cGCGGAAagUCaggacaGCGCCgUGGCAUCGGGc -3'
miRNA:   3'- -CGCUUUg-AGg-----UGCGG-GCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 144391 0.67 0.797975
Target:  5'- aCGAGGcCUUCGucagcggcugucUGCCCGGCGCCGcGGc -3'
miRNA:   3'- cGCUUU-GAGGU------------GCGGGCCGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 144447 0.66 0.872847
Target:  5'- gGCGGcGGCUCgcacuacacgggcuCGCGCgCCGGCgucucGCCGGGc -3'
miRNA:   3'- -CGCU-UUGAG--------------GUGCG-GGCCG-----UGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 145161 0.66 0.853606
Target:  5'- aCGAAAa--CACGCCCGaGCuGCUGGGc -3'
miRNA:   3'- cGCUUUgagGUGCGGGC-CG-UGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 147419 0.68 0.75412
Target:  5'- gGCGucGGCgCgGCGUCCGGCGUCGGGg -3'
miRNA:   3'- -CGCu-UUGaGgUGCGGGCCGUGGCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.