miRNA display CGI


Results 81 - 99 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29894 5' -59.7 NC_006273.1 + 196005 0.71 0.592817
Target:  5'- cGCGA---UCCACGCCuCGuccuCGCCGGGUa -3'
miRNA:   3'- -CGCUuugAGGUGCGG-GCc---GUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 196223 0.68 0.763113
Target:  5'- uCGGAGCaccgCCGCaGCCCGGCuuucCCGGcGUc -3'
miRNA:   3'- cGCUUUGa---GGUG-CGGGCCGu---GGCC-CA- -5'
29894 5' -59.7 NC_006273.1 + 196382 0.69 0.688932
Target:  5'- cGCGcaggacGGACUguaCCugGCGCUgGGCGCCGGGUu -3'
miRNA:   3'- -CGC------UUUGA---GG--UGCGGgCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 197260 0.7 0.669816
Target:  5'- cGCGGGcguGCUggGCGCgCUGGCGCUGGGg -3'
miRNA:   3'- -CGCUU---UGAggUGCG-GGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 197289 0.66 0.846145
Target:  5'- gGCGcGAgUCgGCGCCCGcCGCCGaGGc -3'
miRNA:   3'- -CGCuUUgAGgUGCGGGCcGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 197494 0.68 0.789441
Target:  5'- uGCGAGAcCUgCGCgagGCCCGGCGCCa--- -3'
miRNA:   3'- -CGCUUU-GAgGUG---CGGGCCGUGGccca -5'
29894 5' -59.7 NC_006273.1 + 200929 0.67 0.806376
Target:  5'- cCGGGACUUuucaCACGgugauUUCGGCACCGGGa -3'
miRNA:   3'- cGCUUUGAG----GUGC-----GGGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 204675 0.67 0.822752
Target:  5'- cGCGAGACUUUAgGCgacuugCCGGCcUUGGGUg -3'
miRNA:   3'- -CGCUUUGAGGUgCG------GGCCGuGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 205902 0.67 0.837739
Target:  5'- aCG-AGCUCCACaggggaacccaagGCacgaGGCACCGGGg -3'
miRNA:   3'- cGCuUUGAGGUG-------------CGgg--CCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 210628 0.74 0.443503
Target:  5'- cGCGggGCUCCugGCaggcacacgugacaCCuaGCGCCGGGa -3'
miRNA:   3'- -CGCuuUGAGGugCG--------------GGc-CGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 212667 0.73 0.490048
Target:  5'- gGCGAcGCUCCAUG-CCGGCGCCugacGGUc -3'
miRNA:   3'- -CGCUuUGAGGUGCgGGCCGUGGc---CCA- -5'
29894 5' -59.7 NC_006273.1 + 216837 0.73 0.481086
Target:  5'- cGCGAAAgUCCGCGgCCGGCAUguGGUc -3'
miRNA:   3'- -CGCUUUgAGGUGCgGGCCGUGgcCCA- -5'
29894 5' -59.7 NC_006273.1 + 230534 0.7 0.640955
Target:  5'- gGCGGGACUUagcCGCCCGugGCCGGGa -3'
miRNA:   3'- -CGCUUUGAGgu-GCGGGCcgUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 232881 0.73 0.480194
Target:  5'- cGUGcgGCUCgCGCGCCCacagcgcGGCGCgCGGGUg -3'
miRNA:   3'- -CGCuuUGAG-GUGCGGG-------CCGUG-GCCCA- -5'
29894 5' -59.7 NC_006273.1 + 233666 0.68 0.789441
Target:  5'- gGCGcAGCUCC-CGUCCGaGCGCCGu-- -3'
miRNA:   3'- -CGCuUUGAGGuGCGGGC-CGUGGCcca -5'
29894 5' -59.7 NC_006273.1 + 233691 0.66 0.853606
Target:  5'- gGCGGAuUUCCGCGCggGGgACgGGGUa -3'
miRNA:   3'- -CGCUUuGAGGUGCGggCCgUGgCCCA- -5'
29894 5' -59.7 NC_006273.1 + 233879 0.75 0.380583
Target:  5'- cGCGGAACcCgGCGCCCaGCGCCaGGUa -3'
miRNA:   3'- -CGCUUUGaGgUGCGGGcCGUGGcCCA- -5'
29894 5' -59.7 NC_006273.1 + 234411 0.72 0.517383
Target:  5'- aGCGuAACUCC-CGUuaCCGGCGCCGGc- -3'
miRNA:   3'- -CGCuUUGAGGuGCG--GGCCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 234597 0.66 0.865879
Target:  5'- cGCGGGACgCCACGCaaCGGCagugcgcacaaagcGCCGGa- -3'
miRNA:   3'- -CGCUUUGaGGUGCGg-GCCG--------------UGGCCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.