miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29894 5' -59.7 NC_006273.1 + 194659 0.66 0.865879
Target:  5'- cGCGGGACgCCACGCaaCGGCagugcgcacaaagcGCCGGa- -3'
miRNA:   3'- -CGCUUUGaGGUGCGg-GCCG--------------UGGCCca -5'
29894 5' -59.7 NC_006273.1 + 194473 0.72 0.517383
Target:  5'- aGCGuAACUCC-CGUuaCCGGCGCCGGc- -3'
miRNA:   3'- -CGCuUUGAGGuGCG--GGCCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 189462 0.66 0.867287
Target:  5'- cGCGAcgAAgUCUcgucggaucgcuuGCgGCCuCGGCGCUGGGUa -3'
miRNA:   3'- -CGCU--UUgAGG-------------UG-CGG-GCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 189407 0.71 0.592817
Target:  5'- uGCGggGCUUCuuggaauCGUgaagCGGCGCCGGGUc -3'
miRNA:   3'- -CGCuuUGAGGu------GCGg---GCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 187536 0.66 0.8749
Target:  5'- ---cGACUCC-CGCCguaCGGCGCCGaGGc -3'
miRNA:   3'- cgcuUUGAGGuGCGG---GCCGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 183721 0.72 0.517383
Target:  5'- cCGggGCUCagccuucuCACGCuCCGGCGCaaCGGGUg -3'
miRNA:   3'- cGCuuUGAG--------GUGCG-GGCCGUG--GCCCA- -5'
29894 5' -59.7 NC_006273.1 + 182790 0.7 0.669816
Target:  5'- uGCGAGGCUCUcaaaaAgGCCCugcggaGGCACCGGu- -3'
miRNA:   3'- -CGCUUUGAGG-----UgCGGG------CCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 177030 0.7 0.640955
Target:  5'- cGCGGcuCUCCAuCGCCagCGcGCGCUGGGa -3'
miRNA:   3'- -CGCUuuGAGGU-GCGG--GC-CGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 170038 0.68 0.789441
Target:  5'- uGCuGGGCgCCACGCCaggagGGCAacCCGGGUc -3'
miRNA:   3'- -CGcUUUGaGGUGCGGg----CCGU--GGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 164648 0.69 0.688932
Target:  5'- gGCGGAcacagauaGCUCCAgcguguacgUGCUCgGGUGCCGGGUa -3'
miRNA:   3'- -CGCUU--------UGAGGU---------GCGGG-CCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 164270 0.72 0.554724
Target:  5'- gGCGAAACUgg-UGCUggCGGCGCCGGGUg -3'
miRNA:   3'- -CGCUUUGAgguGCGG--GCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 162925 0.68 0.762218
Target:  5'- uGCGAcacGugUCCGCGauaCCuggugccguugcgGGCACUGGGUc -3'
miRNA:   3'- -CGCU---UugAGGUGCg--GG-------------CCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 160866 0.68 0.748679
Target:  5'- aCGGAA-UCCugGagggaaaagacgagCCGGCGCCGGGUa -3'
miRNA:   3'- cGCUUUgAGGugCg-------------GGCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 160556 0.67 0.822752
Target:  5'- cGCGGAGC-CCGCGgCUGGUACgaGcGGUg -3'
miRNA:   3'- -CGCUUUGaGGUGCgGGCCGUGg-C-CCA- -5'
29894 5' -59.7 NC_006273.1 + 155760 0.67 0.806376
Target:  5'- cUGcuACUCCAC-CCUgcuGGUGCCGGGUg -3'
miRNA:   3'- cGCuuUGAGGUGcGGG---CCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 151969 0.75 0.37286
Target:  5'- cGCGGAugUCC-CGCUCGGgcgcCGCCGGGc -3'
miRNA:   3'- -CGCUUugAGGuGCGGGCC----GUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 151640 0.68 0.78078
Target:  5'- -gGAAGCguUCCAgCGaCUCGGUGCCGGGc -3'
miRNA:   3'- cgCUUUG--AGGU-GC-GGGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 149410 0.66 0.8749
Target:  5'- -gGAGAUUCgACGUCCgcugcccgauGGCACgGGGg -3'
miRNA:   3'- cgCUUUGAGgUGCGGG----------CCGUGgCCCa -5'
29894 5' -59.7 NC_006273.1 + 147475 0.74 0.437541
Target:  5'- cGCGGgcAACUCCAuuugcuucggcgUGCCCGGCGagaCGGGa -3'
miRNA:   3'- -CGCU--UUGAGGU------------GCGGGCCGUg--GCCCa -5'
29894 5' -59.7 NC_006273.1 + 147419 0.68 0.75412
Target:  5'- gGCGucGGCgCgGCGUCCGGCGUCGGGg -3'
miRNA:   3'- -CGCu-UUGaGgUGCGGGCCGUGGCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.