miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29894 5' -59.7 NC_006273.1 + 142342 0.68 0.789441
Target:  5'- cGCGGAAagUCaggacaGCGCCgUGGCAUCGGGc -3'
miRNA:   3'- -CGCUUUg-AGg-----UGCGG-GCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 39475 0.69 0.726601
Target:  5'- cGCGGAACagcgCCAacUGCUgGGCACCGuGGc -3'
miRNA:   3'- -CGCUUUGa---GGU--GCGGgCCGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 61410 0.69 0.726601
Target:  5'- uGCGGAugaGCagCGCGCCCGGCugCGc-- -3'
miRNA:   3'- -CGCUU---UGagGUGCGGGCCGugGCcca -5'
29894 5' -59.7 NC_006273.1 + 42916 0.69 0.735857
Target:  5'- aGCGcgcGCUCCACGauCUCGGCAUCGuGGc -3'
miRNA:   3'- -CGCuu-UGAGGUGC--GGGCCGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 94367 0.68 0.745032
Target:  5'- cUGGAGCaCCAUccggggccguggGCCgGGCACCGGGc -3'
miRNA:   3'- cGCUUUGaGGUG------------CGGgCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 122207 0.68 0.745032
Target:  5'- cGCGcGACUCCAUGCugCCuGCGCguaCGGGUg -3'
miRNA:   3'- -CGCuUUGAGGUGCG--GGcCGUG---GCCCA- -5'
29894 5' -59.7 NC_006273.1 + 21912 0.68 0.772002
Target:  5'- cGCGGAcaacaACUgCAgcCG-CCGGCAUCGGGUa -3'
miRNA:   3'- -CGCUU-----UGAgGU--GCgGGCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 195935 0.68 0.772002
Target:  5'- gGCGAcg--CCGgGCCaCGGCguccACCGGGUa -3'
miRNA:   3'- -CGCUuugaGGUgCGG-GCCG----UGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 151640 0.68 0.78078
Target:  5'- -gGAAGCguUCCAgCGaCUCGGUGCCGGGc -3'
miRNA:   3'- cgCUUUG--AGGU-GC-GGGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 196382 0.69 0.688932
Target:  5'- cGCGcaggacGGACUguaCCugGCGCUgGGCGCCGGGUu -3'
miRNA:   3'- -CGC------UUUGA---GG--UGCGGgCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 164648 0.69 0.688932
Target:  5'- gGCGGAcacagauaGCUCCAgcguguacgUGCUCgGGUGCCGGGUa -3'
miRNA:   3'- -CGCUU--------UGAGGU---------GCGGG-CCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 197260 0.7 0.669816
Target:  5'- cGCGGGcguGCUggGCGCgCUGGCGCUGGGg -3'
miRNA:   3'- -CGCUU---UGAggUGCG-GGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 3625 0.75 0.380583
Target:  5'- aUGAgcAAUUCCuCGCCCGGCGCCGGc- -3'
miRNA:   3'- cGCU--UUGAGGuGCGGGCCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 233879 0.75 0.380583
Target:  5'- cGCGGAACcCgGCGCCCaGCGCCaGGUa -3'
miRNA:   3'- -CGCUUUGaGgUGCGGGcCGUGGcCCA- -5'
29894 5' -59.7 NC_006273.1 + 210628 0.74 0.443503
Target:  5'- cGCGggGCUCCugGCaggcacacgugacaCCuaGCGCCGGGa -3'
miRNA:   3'- -CGCuuUGAGGugCG--------------GGc-CGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 232881 0.73 0.480194
Target:  5'- cGUGcgGCUCgCGCGCCCacagcgcGGCGCgCGGGUg -3'
miRNA:   3'- -CGCuuUGAG-GUGCGGG-------CCGUG-GCCCA- -5'
29894 5' -59.7 NC_006273.1 + 216837 0.73 0.481086
Target:  5'- cGCGAAAgUCCGCGgCCGGCAUguGGUc -3'
miRNA:   3'- -CGCUUUgAGGUGCgGGCCGUGgcCCA- -5'
29894 5' -59.7 NC_006273.1 + 194473 0.72 0.517383
Target:  5'- aGCGuAACUCC-CGUuaCCGGCGCCGGc- -3'
miRNA:   3'- -CGCuUUGAGGuGCG--GGCCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 48578 0.7 0.660213
Target:  5'- -aGggGCggCAUGCCguuggCGGCGCCGGGa -3'
miRNA:   3'- cgCuuUGagGUGCGG-----GCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 78505 0.7 0.660213
Target:  5'- -aGGAAC-CCugcggcgcCGCCCGGaCACCGGGc -3'
miRNA:   3'- cgCUUUGaGGu-------GCGGGCC-GUGGCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.