miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29894 5' -59.7 NC_006273.1 + 233666 0.68 0.789441
Target:  5'- gGCGcAGCUCC-CGUCCGaGCGCCGu-- -3'
miRNA:   3'- -CGCuUUGAGGuGCGGGC-CGUGGCcca -5'
29894 5' -59.7 NC_006273.1 + 142342 0.68 0.789441
Target:  5'- cGCGGAAagUCaggacaGCGCCgUGGCAUCGGGc -3'
miRNA:   3'- -CGCUUUg-AGg-----UGCGG-GCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 151640 0.68 0.78078
Target:  5'- -gGAAGCguUCCAgCGaCUCGGUGCCGGGc -3'
miRNA:   3'- cgCUUUG--AGGU-GC-GGGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 195935 0.68 0.772002
Target:  5'- gGCGAcg--CCGgGCCaCGGCguccACCGGGUa -3'
miRNA:   3'- -CGCUuugaGGUgCGG-GCCG----UGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 21912 0.68 0.772002
Target:  5'- cGCGGAcaacaACUgCAgcCG-CCGGCAUCGGGUa -3'
miRNA:   3'- -CGCUU-----UGAgGU--GCgGGCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 122207 0.68 0.745032
Target:  5'- cGCGcGACUCCAUGCugCCuGCGCguaCGGGUg -3'
miRNA:   3'- -CGCuUUGAGGUGCG--GGcCGUG---GCCCA- -5'
29894 5' -59.7 NC_006273.1 + 94367 0.68 0.745032
Target:  5'- cUGGAGCaCCAUccggggccguggGCCgGGCACCGGGc -3'
miRNA:   3'- cGCUUUGaGGUG------------CGGgCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 42916 0.69 0.735857
Target:  5'- aGCGcgcGCUCCACGauCUCGGCAUCGuGGc -3'
miRNA:   3'- -CGCuu-UGAGGUGC--GGGCCGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 61410 0.69 0.726601
Target:  5'- uGCGGAugaGCagCGCGCCCGGCugCGc-- -3'
miRNA:   3'- -CGCUU---UGagGUGCGGGCCGugGCcca -5'
29894 5' -59.7 NC_006273.1 + 141048 0.74 0.446072
Target:  5'- gGUGGGACgggcCCGCGgacggaCCGGCGCCGGGc -3'
miRNA:   3'- -CGCUUUGa---GGUGCg-----GGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 90967 0.74 0.454694
Target:  5'- cCGAAcCgUCCGcCGCCgCGGCGCCGGGc -3'
miRNA:   3'- cGCUUuG-AGGU-GCGG-GCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 47240 0.73 0.463405
Target:  5'- cCGGAACUCgGCGaCCCGGCccGCCGGc- -3'
miRNA:   3'- cGCUUUGAGgUGC-GGGCCG--UGGCCca -5'
29894 5' -59.7 NC_006273.1 + 37988 0.73 0.480194
Target:  5'- cGUGcgGCUCgCGCGCCCacagcgcGGCGCgCGGGUg -3'
miRNA:   3'- -CGCuuUGAG-GUGCGGG-------CCGUG-GCCCA- -5'
29894 5' -59.7 NC_006273.1 + 147475 0.74 0.437541
Target:  5'- cGCGGgcAACUCCAuuugcuucggcgUGCCCGGCGagaCGGGa -3'
miRNA:   3'- -CGCU--UUGAGGU------------GCGGGCCGUg--GCCCa -5'
29894 5' -59.7 NC_006273.1 + 11845 0.74 0.437541
Target:  5'- aGUGccGCUCCACGCCgCGGCACCa--- -3'
miRNA:   3'- -CGCuuUGAGGUGCGG-GCCGUGGccca -5'
29894 5' -59.7 NC_006273.1 + 38986 0.75 0.380583
Target:  5'- cGCGGAACcCgGCGCCCaGCGCCaGGUa -3'
miRNA:   3'- -CGCUUUGaGgUGCGGGcCGUGGcCCA- -5'
29894 5' -59.7 NC_006273.1 + 141459 0.76 0.349604
Target:  5'- cGCGGG--UCCugGCCCGcgcaugcGCACCGGGUc -3'
miRNA:   3'- -CGCUUugAGGugCGGGC-------CGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 140993 0.76 0.32184
Target:  5'- cCGGAGCgggCCGCGCCCGGUGCCcGGc -3'
miRNA:   3'- cGCUUUGa--GGUGCGGGCCGUGGcCCa -5'
29894 5' -59.7 NC_006273.1 + 141258 0.77 0.314992
Target:  5'- cGCGA--C-CCAUGCCCGGCACgGGGc -3'
miRNA:   3'- -CGCUuuGaGGUGCGGGCCGUGgCCCa -5'
29894 5' -59.7 NC_006273.1 + 149410 0.66 0.8749
Target:  5'- -gGAGAUUCgACGUCCgcugcccgauGGCACgGGGg -3'
miRNA:   3'- cgCUUUGAGgUGCGGG----------CCGUGgCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.