Results 81 - 99 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29894 | 5' | -59.7 | NC_006273.1 | + | 11845 | 0.74 | 0.437541 |
Target: 5'- aGUGccGCUCCACGCCgCGGCACCa--- -3' miRNA: 3'- -CGCuuUGAGGUGCGG-GCCGUGGccca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 38986 | 0.75 | 0.380583 |
Target: 5'- cGCGGAACcCgGCGCCCaGCGCCaGGUa -3' miRNA: 3'- -CGCUUUGaGgUGCGGGcCGUGGcCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 141459 | 0.76 | 0.349604 |
Target: 5'- cGCGGG--UCCugGCCCGcgcaugcGCACCGGGUc -3' miRNA: 3'- -CGCUUugAGGugCGGGC-------CGUGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 140993 | 0.76 | 0.32184 |
Target: 5'- cCGGAGCgggCCGCGCCCGGUGCCcGGc -3' miRNA: 3'- cGCUUUGa--GGUGCGGGCCGUGGcCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 141258 | 0.77 | 0.314992 |
Target: 5'- cGCGA--C-CCAUGCCCGGCACgGGGc -3' miRNA: 3'- -CGCUuuGaGGUGCGGGCCGUGgCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 36646 | 0.73 | 0.481086 |
Target: 5'- uGCGGGAa--CugGCCUGGCGgCGGGUa -3' miRNA: 3'- -CGCUUUgagGugCGGGCCGUgGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 212667 | 0.73 | 0.490048 |
Target: 5'- gGCGAcGCUCCAUG-CCGGCGCCugacGGUc -3' miRNA: 3'- -CGCUuUGAGGUGCgGGCCGUGGc---CCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 183721 | 0.72 | 0.517383 |
Target: 5'- cCGggGCUCagccuucuCACGCuCCGGCGCaaCGGGUg -3' miRNA: 3'- cGCuuUGAG--------GUGCG-GGCCGUG--GCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 182790 | 0.7 | 0.669816 |
Target: 5'- uGCGAGGCUCUcaaaaAgGCCCugcggaGGCACCGGu- -3' miRNA: 3'- -CGCUUUGAGG-----UgCGGG------CCGUGGCCca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 21837 | 0.7 | 0.669816 |
Target: 5'- ----uGCUCUGCGCUaCGGCGCUGGGa -3' miRNA: 3'- cgcuuUGAGGUGCGG-GCCGUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 230534 | 0.7 | 0.640955 |
Target: 5'- gGCGGGACUUagcCGCCCGugGCCGGGa -3' miRNA: 3'- -CGCUUUGAGgu-GCGGGCcgUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 177030 | 0.7 | 0.640955 |
Target: 5'- cGCGGcuCUCCAuCGCCagCGcGCGCUGGGa -3' miRNA: 3'- -CGCUuuGAGGU-GCGG--GC-CGUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 93628 | 0.7 | 0.640955 |
Target: 5'- uGCGcAGCUUCGCGCauccaCUGGCGCCGGc- -3' miRNA: 3'- -CGCuUUGAGGUGCG-----GGCCGUGGCCca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 196005 | 0.71 | 0.592817 |
Target: 5'- cGCGA---UCCACGCCuCGuccuCGCCGGGUa -3' miRNA: 3'- -CGCUuugAGGUGCGG-GCc---GUGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 189407 | 0.71 | 0.592817 |
Target: 5'- uGCGggGCUUCuuggaauCGUgaagCGGCGCCGGGUc -3' miRNA: 3'- -CGCuuUGAGGu------GCGg---GCCGUGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 164270 | 0.72 | 0.554724 |
Target: 5'- gGCGAAACUgg-UGCUggCGGCGCCGGGUg -3' miRNA: 3'- -CGCUUUGAgguGCGG--GCCGUGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 45934 | 0.72 | 0.53594 |
Target: 5'- aCGAGACUUCGuCGCgaggCCGGCucCCGGGUg -3' miRNA: 3'- cGCUUUGAGGU-GCG----GGCCGu-GGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 234411 | 0.72 | 0.517383 |
Target: 5'- aGCGuAACUCC-CGUuaCCGGCGCCGGc- -3' miRNA: 3'- -CGCuUUGAGGuGCG--GGCCGUGGCCca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 90578 | 1.09 | 0.002219 |
Target: 5'- cGCGAAACUCCACGCCCGGCACCGGGUg -3' miRNA: 3'- -CGCUUUGAGGUGCGGGCCGUGGCCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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