miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29894 5' -59.7 NC_006273.1 + 21837 0.7 0.669816
Target:  5'- ----uGCUCUGCGCUaCGGCGCUGGGa -3'
miRNA:   3'- cgcuuUGAGGUGCGG-GCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 93628 0.7 0.640955
Target:  5'- uGCGcAGCUUCGCGCauccaCUGGCGCCGGc- -3'
miRNA:   3'- -CGCuUUGAGGUGCG-----GGCCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 37988 0.73 0.480194
Target:  5'- cGUGcgGCUCgCGCGCCCacagcgcGGCGCgCGGGUg -3'
miRNA:   3'- -CGCuuUGAG-GUGCGGG-------CCGUG-GCCCA- -5'
29894 5' -59.7 NC_006273.1 + 141459 0.76 0.349604
Target:  5'- cGCGGG--UCCugGCCCGcgcaugcGCACCGGGUc -3'
miRNA:   3'- -CGCUUugAGGugCGGGC-------CGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 6266 0.68 0.789441
Target:  5'- gGCGAAACaaCCAgCGCCgGGUACUGuGGc -3'
miRNA:   3'- -CGCUUUGa-GGU-GCGGgCCGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 147419 0.68 0.75412
Target:  5'- gGCGucGGCgCgGCGUCCGGCGUCGGGg -3'
miRNA:   3'- -CGCu-UUGaGgUGCGGGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 189407 0.71 0.592817
Target:  5'- uGCGggGCUUCuuggaauCGUgaagCGGCGCCGGGUc -3'
miRNA:   3'- -CGCuuUGAGGu------GCGg---GCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 140993 0.76 0.32184
Target:  5'- cCGGAGCgggCCGCGCCCGGUGCCcGGc -3'
miRNA:   3'- cGCUUUGa--GGUGCGGGCCGUGGcCCa -5'
29894 5' -59.7 NC_006273.1 + 160866 0.68 0.748679
Target:  5'- aCGGAA-UCCugGagggaaaagacgagCCGGCGCCGGGUa -3'
miRNA:   3'- cGCUUUgAGGugCg-------------GGCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 141258 0.77 0.314992
Target:  5'- cGCGA--C-CCAUGCCCGGCACgGGGc -3'
miRNA:   3'- -CGCUuuGaGGUGCGGGCCGUGgCCCa -5'
29894 5' -59.7 NC_006273.1 + 196005 0.71 0.592817
Target:  5'- cGCGA---UCCACGCCuCGuccuCGCCGGGUa -3'
miRNA:   3'- -CGCUuugAGGUGCGG-GCc---GUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 182790 0.7 0.669816
Target:  5'- uGCGAGGCUCUcaaaaAgGCCCugcggaGGCACCGGu- -3'
miRNA:   3'- -CGCUUUGAGG-----UgCGGG------CCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 234411 0.72 0.517383
Target:  5'- aGCGuAACUCC-CGUuaCCGGCGCCGGc- -3'
miRNA:   3'- -CGCuUUGAGGuGCG--GGCCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 36646 0.73 0.481086
Target:  5'- uGCGGGAa--CugGCCUGGCGgCGGGUa -3'
miRNA:   3'- -CGCUUUgagGugCGGGCCGUgGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 141048 0.74 0.446072
Target:  5'- gGUGGGACgggcCCGCGgacggaCCGGCGCCGGGc -3'
miRNA:   3'- -CGCUUUGa---GGUGCg-----GGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 38986 0.75 0.380583
Target:  5'- cGCGGAACcCgGCGCCCaGCGCCaGGUa -3'
miRNA:   3'- -CGCUUUGaGgUGCGGGcCGUGGcCCA- -5'
29894 5' -59.7 NC_006273.1 + 50323 0.67 0.797975
Target:  5'- aUGAGA--CCACGUcgCCGGCGCCGGuGUu -3'
miRNA:   3'- cGCUUUgaGGUGCG--GGCCGUGGCC-CA- -5'
29894 5' -59.7 NC_006273.1 + 38774 0.68 0.789441
Target:  5'- gGCGcAGCUCC-CGUCCGaGCGCCGu-- -3'
miRNA:   3'- -CGCuUUGAGGuGCGGGC-CGUGGCcca -5'
29894 5' -59.7 NC_006273.1 + 134549 0.68 0.772002
Target:  5'- cCGAGAgUCUACGUCUGGCACCc--- -3'
miRNA:   3'- cGCUUUgAGGUGCGGGCCGUGGccca -5'
29894 5' -59.7 NC_006273.1 + 162925 0.68 0.762218
Target:  5'- uGCGAcacGugUCCGCGauaCCuggugccguugcgGGCACUGGGUc -3'
miRNA:   3'- -CGCU---UugAGGUGCg--GG-------------CCGUGGCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.