miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29894 5' -59.7 NC_006273.1 + 133820 0.67 0.830712
Target:  5'- aGCGcGAACgCCGCGCCCGucGCGCaCGGc- -3'
miRNA:   3'- -CGC-UUUGaGGUGCGGGC--CGUG-GCCca -5'
29894 5' -59.7 NC_006273.1 + 183721 0.72 0.517383
Target:  5'- cCGggGCUCagccuucuCACGCuCCGGCGCaaCGGGUg -3'
miRNA:   3'- cGCuuUGAG--------GUGCG-GGCCGUG--GCCCA- -5'
29894 5' -59.7 NC_006273.1 + 93628 0.7 0.640955
Target:  5'- uGCGcAGCUUCGCGCauccaCUGGCGCCGGc- -3'
miRNA:   3'- -CGCuUUGAGGUGCG-----GGCCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 182790 0.7 0.669816
Target:  5'- uGCGAGGCUCUcaaaaAgGCCCugcggaGGCACCGGu- -3'
miRNA:   3'- -CGCUUUGAGG-----UgCGGG------CCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 160866 0.68 0.748679
Target:  5'- aCGGAA-UCCugGagggaaaagacgagCCGGCGCCGGGUa -3'
miRNA:   3'- cGCUUUgAGGugCg-------------GGCCGUGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 233691 0.66 0.853606
Target:  5'- gGCGGAuUUCCGCGCggGGgACgGGGUa -3'
miRNA:   3'- -CGCUUuGAGGUGCGggCCgUGgCCCA- -5'
29894 5' -59.7 NC_006273.1 + 160556 0.67 0.822752
Target:  5'- cGCGGAGC-CCGCGgCUGGUACgaGcGGUg -3'
miRNA:   3'- -CGCUUUGaGGUGCgGGCCGUGg-C-CCA- -5'
29894 5' -59.7 NC_006273.1 + 50323 0.67 0.797975
Target:  5'- aUGAGA--CCACGUcgCCGGCGCCGGuGUu -3'
miRNA:   3'- cGCUUUgaGGUGCG--GGCCGUGGCC-CA- -5'
29894 5' -59.7 NC_006273.1 + 6266 0.68 0.789441
Target:  5'- gGCGAAACaaCCAgCGCCgGGUACUGuGGc -3'
miRNA:   3'- -CGCUUUGa-GGU-GCGGgCCGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 134549 0.68 0.772002
Target:  5'- cCGAGAgUCUACGUCUGGCACCc--- -3'
miRNA:   3'- cGCUUUgAGGUGCGGGCCGUGGccca -5'
29894 5' -59.7 NC_006273.1 + 45876 0.67 0.822752
Target:  5'- cUGGAACUCuCACacaGCgCGGCGgCCGGGc -3'
miRNA:   3'- cGCUUUGAG-GUG---CGgGCCGU-GGCCCa -5'
29894 5' -59.7 NC_006273.1 + 46853 0.67 0.822752
Target:  5'- gGCGugcuaAAACgagCgCugGUCCGGCugcACCGGGUa -3'
miRNA:   3'- -CGC-----UUUGa--G-GugCGGGCCG---UGGCCCA- -5'
29894 5' -59.7 NC_006273.1 + 21817 0.67 0.822752
Target:  5'- cGCGu-AgUCCACuacaucCCCGGCACCucGGGUc -3'
miRNA:   3'- -CGCuuUgAGGUGc-----GGGCCGUGG--CCCA- -5'
29894 5' -59.7 NC_006273.1 + 200929 0.67 0.806376
Target:  5'- cCGGGACUUuucaCACGgugauUUCGGCACCGGGa -3'
miRNA:   3'- cGCUUUGAG----GUGC-----GGGCCGUGGCCCa -5'
29894 5' -59.7 NC_006273.1 + 130927 0.67 0.806376
Target:  5'- cGCGu--CUCaugUACGCUCGGUACgGGGa -3'
miRNA:   3'- -CGCuuuGAG---GUGCGGGCCGUGgCCCa -5'
29894 5' -59.7 NC_006273.1 + 194473 0.72 0.517383
Target:  5'- aGCGuAACUCC-CGUuaCCGGCGCCGGc- -3'
miRNA:   3'- -CGCuUUGAGGuGCG--GGCCGUGGCCca -5'
29894 5' -59.7 NC_006273.1 + 101972 0.67 0.830712
Target:  5'- cGCGucgcuuGACggCCACGCagcaGGCGCCGuGGg -3'
miRNA:   3'- -CGCu-----UUGa-GGUGCGgg--CCGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 39475 0.69 0.726601
Target:  5'- cGCGGAACagcgCCAacUGCUgGGCACCGuGGc -3'
miRNA:   3'- -CGCUUUGa---GGU--GCGGgCCGUGGC-CCa -5'
29894 5' -59.7 NC_006273.1 + 61410 0.69 0.726601
Target:  5'- uGCGGAugaGCagCGCGCCCGGCugCGc-- -3'
miRNA:   3'- -CGCUU---UGagGUGCGGGCCGugGCcca -5'
29894 5' -59.7 NC_006273.1 + 42916 0.69 0.735857
Target:  5'- aGCGcgcGCUCCACGauCUCGGCAUCGuGGc -3'
miRNA:   3'- -CGCuu-UGAGGUGC--GGGCCGUGGC-CCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.