Results 61 - 80 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29894 | 5' | -59.7 | NC_006273.1 | + | 39475 | 0.69 | 0.726601 |
Target: 5'- cGCGGAACagcgCCAacUGCUgGGCACCGuGGc -3' miRNA: 3'- -CGCUUUGa---GGU--GCGGgCCGUGGC-CCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 196382 | 0.69 | 0.688932 |
Target: 5'- cGCGcaggacGGACUguaCCugGCGCUgGGCGCCGGGUu -3' miRNA: 3'- -CGC------UUUGA---GG--UGCGGgCCGUGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 197260 | 0.7 | 0.669816 |
Target: 5'- cGCGGGcguGCUggGCGCgCUGGCGCUGGGg -3' miRNA: 3'- -CGCUU---UGAggUGCG-GGCCGUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 194473 | 0.72 | 0.517383 |
Target: 5'- aGCGuAACUCC-CGUuaCCGGCGCCGGc- -3' miRNA: 3'- -CGCuUUGAGGuGCG--GGCCGUGGCCca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 216837 | 0.73 | 0.481086 |
Target: 5'- cGCGAAAgUCCGCGgCCGGCAUguGGUc -3' miRNA: 3'- -CGCUUUgAGGUGCgGGCCGUGgcCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 200929 | 0.67 | 0.806376 |
Target: 5'- cCGGGACUUuucaCACGgugauUUCGGCACCGGGa -3' miRNA: 3'- cGCUUUGAG----GUGC-----GGGCCGUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 45876 | 0.67 | 0.822752 |
Target: 5'- cUGGAACUCuCACacaGCgCGGCGgCCGGGc -3' miRNA: 3'- cGCUUUGAG-GUG---CGgGCCGU-GGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 117205 | 0.66 | 0.8749 |
Target: 5'- gGCGAcagccgcagucaGGCcgCCACG-CCGGCgGCUGGGg -3' miRNA: 3'- -CGCU------------UUGa-GGUGCgGGCCG-UGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 187536 | 0.66 | 0.8749 |
Target: 5'- ---cGACUCC-CGCCguaCGGCGCCGaGGc -3' miRNA: 3'- cgcuUUGAGGuGCGG---GCCGUGGC-CCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 144447 | 0.66 | 0.872847 |
Target: 5'- gGCGGcGGCUCgcacuacacgggcuCGCGCgCCGGCgucucGCCGGGc -3' miRNA: 3'- -CGCU-UUGAG--------------GUGCG-GGCCG-----UGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 40947 | 0.66 | 0.867989 |
Target: 5'- gGCGucgcGACUCgCuuGCCCaGCACCGGu- -3' miRNA: 3'- -CGCu---UUGAG-GugCGGGcCGUGGCCca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 42301 | 0.66 | 0.867989 |
Target: 5'- gGCGAuccAGCUCCAgcCGUCCagcGGCugCGuGGg -3' miRNA: 3'- -CGCU---UUGAGGU--GCGGG---CCGugGC-CCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 189462 | 0.66 | 0.867287 |
Target: 5'- cGCGAcgAAgUCUcgucggaucgcuuGCgGCCuCGGCGCUGGGUa -3' miRNA: 3'- -CGCU--UUgAGG-------------UG-CGG-GCCGUGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 194659 | 0.66 | 0.865879 |
Target: 5'- cGCGGGACgCCACGCaaCGGCagugcgcacaaagcGCCGGa- -3' miRNA: 3'- -CGCUUUGaGGUGCGg-GCCG--------------UGGCCca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 79600 | 0.66 | 0.860889 |
Target: 5'- gGC-AGGgUCCACGggguacucgccaCCCGGCACCagcaGGGUg -3' miRNA: 3'- -CGcUUUgAGGUGC------------GGGCCGUGG----CCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 145161 | 0.66 | 0.853606 |
Target: 5'- aCGAAAa--CACGCCCGaGCuGCUGGGc -3' miRNA: 3'- cGCUUUgagGUGCGGGC-CG-UGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 30594 | 0.66 | 0.853606 |
Target: 5'- cGCGAGAC-CgGCgGCaCCGGCGCCGc-- -3' miRNA: 3'- -CGCUUUGaGgUG-CG-GGCCGUGGCcca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 38183 | 0.67 | 0.822752 |
Target: 5'- gGCGGGACgccgagcCCGCGCCgCGGCcgcucauCCGGa- -3' miRNA: 3'- -CGCUUUGa------GGUGCGG-GCCGu------GGCCca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 21817 | 0.67 | 0.822752 |
Target: 5'- cGCGu-AgUCCACuacaucCCCGGCACCucGGGUc -3' miRNA: 3'- -CGCuuUgAGGUGc-----GGGCCGUGG--CCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 46853 | 0.67 | 0.822752 |
Target: 5'- gGCGugcuaAAACgagCgCugGUCCGGCugcACCGGGUa -3' miRNA: 3'- -CGC-----UUUGa--G-GugCGGGCCG---UGGCCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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