Results 81 - 99 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29894 | 5' | -59.7 | NC_006273.1 | + | 189462 | 0.66 | 0.867287 |
Target: 5'- cGCGAcgAAgUCUcgucggaucgcuuGCgGCCuCGGCGCUGGGUa -3' miRNA: 3'- -CGCU--UUgAGG-------------UG-CGG-GCCGUGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 42301 | 0.66 | 0.867989 |
Target: 5'- gGCGAuccAGCUCCAgcCGUCCagcGGCugCGuGGg -3' miRNA: 3'- -CGCU---UUGAGGU--GCGGG---CCGugGC-CCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 40947 | 0.66 | 0.867989 |
Target: 5'- gGCGucgcGACUCgCuuGCCCaGCACCGGu- -3' miRNA: 3'- -CGCu---UUGAG-GugCGGGcCGUGGCCca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 144447 | 0.66 | 0.872847 |
Target: 5'- gGCGGcGGCUCgcacuacacgggcuCGCGCgCCGGCgucucGCCGGGc -3' miRNA: 3'- -CGCU-UUGAG--------------GUGCG-GGCCG-----UGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 187536 | 0.66 | 0.8749 |
Target: 5'- ---cGACUCC-CGCCguaCGGCGCCGaGGc -3' miRNA: 3'- cgcuUUGAGGuGCGG---GCCGUGGC-CCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 2182 | 0.66 | 0.849151 |
Target: 5'- cCGuccAACUUCACGCCgaaacgacccgcacaUGGCGCUGGGc -3' miRNA: 3'- cGCu--UUGAGGUGCGG---------------GCCGUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 86727 | 0.66 | 0.853606 |
Target: 5'- cGCGcAGAcCUCCAgGCCggccucCGGCGCCaGGa -3' miRNA: 3'- -CGC-UUU-GAGGUgCGG------GCCGUGGcCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 197289 | 0.66 | 0.846145 |
Target: 5'- gGCGcGAgUCgGCGCCCGcCGCCGaGGc -3' miRNA: 3'- -CGCuUUgAGgUGCGGGCcGUGGC-CCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 200929 | 0.67 | 0.806376 |
Target: 5'- cCGGGACUUuucaCACGgugauUUCGGCACCGGGa -3' miRNA: 3'- cGCUUUGAG----GUGC-----GGGCCGUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 45876 | 0.67 | 0.822752 |
Target: 5'- cUGGAACUCuCACacaGCgCGGCGgCCGGGc -3' miRNA: 3'- cGCUUUGAG-GUG---CGgGCCGU-GGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 46853 | 0.67 | 0.822752 |
Target: 5'- gGCGugcuaAAACgagCgCugGUCCGGCugcACCGGGUa -3' miRNA: 3'- -CGC-----UUUGa--G-GugCGGGCCG---UGGCCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 21817 | 0.67 | 0.822752 |
Target: 5'- cGCGu-AgUCCACuacaucCCCGGCACCucGGGUc -3' miRNA: 3'- -CGCuuUgAGGUGc-----GGGCCGUGG--CCCA- -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 38183 | 0.67 | 0.822752 |
Target: 5'- gGCGGGACgccgagcCCGCGCCgCGGCcgcucauCCGGa- -3' miRNA: 3'- -CGCUUUGa------GGUGCGG-GCCGu------GGCCca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 101972 | 0.67 | 0.830712 |
Target: 5'- cGCGucgcuuGACggCCACGCagcaGGCGCCGuGGg -3' miRNA: 3'- -CGCu-----UUGa-GGUGCGgg--CCGUGGC-CCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 205902 | 0.67 | 0.837739 |
Target: 5'- aCG-AGCUCCACaggggaacccaagGCacgaGGCACCGGGg -3' miRNA: 3'- cGCuUUGAGGUG-------------CGgg--CCGUGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 21638 | 0.67 | 0.838512 |
Target: 5'- aCGAGAC-CCACaGCCUGGCgACCGa-- -3' miRNA: 3'- cGCUUUGaGGUG-CGGGCCG-UGGCcca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 47975 | 0.66 | 0.843873 |
Target: 5'- aCGAAcCaCCACGCCCGcGUccacguacaccucgGCCGGGa -3' miRNA: 3'- cGCUUuGaGGUGCGGGC-CG--------------UGGCCCa -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 45948 | 0.66 | 0.846145 |
Target: 5'- aCGAcgAGCUCCgucacaGCGaCCCGGCGCCGc-- -3' miRNA: 3'- cGCU--UUGAGG------UGC-GGGCCGUGGCcca -5' |
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29894 | 5' | -59.7 | NC_006273.1 | + | 117205 | 0.66 | 0.8749 |
Target: 5'- gGCGAcagccgcagucaGGCcgCCACG-CCGGCgGCUGGGg -3' miRNA: 3'- -CGCU------------UUGa-GGUGCgGGCCG-UGGCCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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