miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29896 3' -56.3 NC_006273.1 + 120629 0.66 0.954558
Target:  5'- cCAUAcGCCUuccaauUCGGCGAAGAugcgguagauGUCGUUGg -3'
miRNA:   3'- -GUGU-CGGA------GGCCGCUUCUu---------CAGCGAC- -5'
29896 3' -56.3 NC_006273.1 + 65558 0.66 0.950642
Target:  5'- cUACAGCUg-CGGCGAAGggGcC-CUGc -3'
miRNA:   3'- -GUGUCGGagGCCGCUUCuuCaGcGAC- -5'
29896 3' -56.3 NC_006273.1 + 161708 0.66 0.950642
Target:  5'- cCACGGCCUCCGaCGAGc--GUUGCg- -3'
miRNA:   3'- -GUGUCGGAGGCcGCUUcuuCAGCGac -5'
29896 3' -56.3 NC_006273.1 + 7197 0.66 0.950642
Target:  5'- gACGGUCUCCGGUGAcGu--UCGCa- -3'
miRNA:   3'- gUGUCGGAGGCCGCUuCuucAGCGac -5'
29896 3' -56.3 NC_006273.1 + 153595 0.66 0.950642
Target:  5'- gGCGGCgUgaCCGGCGguGcGGUCGCg- -3'
miRNA:   3'- gUGUCGgA--GGCCGCuuCuUCAGCGac -5'
29896 3' -56.3 NC_006273.1 + 36939 0.66 0.950642
Target:  5'- aGCAGCCg-UGGUGGAGGAGgcuaCGCg- -3'
miRNA:   3'- gUGUCGGagGCCGCUUCUUCa---GCGac -5'
29896 3' -56.3 NC_006273.1 + 199689 0.66 0.946507
Target:  5'- gGCAcGCCUuugcguaccugcCCGGCGAGGAcaaGGUguacgUGCUGg -3'
miRNA:   3'- gUGU-CGGA------------GGCCGCUUCU---UCA-----GCGAC- -5'
29896 3' -56.3 NC_006273.1 + 227784 0.66 0.946507
Target:  5'- -cCGGCCUCCaGGaGGAGAuggCGCUGu -3'
miRNA:   3'- guGUCGGAGG-CCgCUUCUucaGCGAC- -5'
29896 3' -56.3 NC_006273.1 + 176639 0.66 0.945223
Target:  5'- aACAGCgUCCGGCGGGugguugacguuuauGAAuUCGCa- -3'
miRNA:   3'- gUGUCGgAGGCCGCUU--------------CUUcAGCGac -5'
29896 3' -56.3 NC_006273.1 + 39370 0.66 0.94215
Target:  5'- gGCGGCgCUacCCGGCGAGGAcgaggcguGGaUCGCg- -3'
miRNA:   3'- gUGUCG-GA--GGCCGCUUCU--------UC-AGCGac -5'
29896 3' -56.3 NC_006273.1 + 128730 0.66 0.94215
Target:  5'- aGCAGCaUCCGGgGAGGAugaagcgucGUCGCc- -3'
miRNA:   3'- gUGUCGgAGGCCgCUUCUu--------CAGCGac -5'
29896 3' -56.3 NC_006273.1 + 1965 0.66 0.94215
Target:  5'- gCGCGGCggggCCGGCGAcgGGGAcgacGUCGCg- -3'
miRNA:   3'- -GUGUCGga--GGCCGCU--UCUU----CAGCGac -5'
29896 3' -56.3 NC_006273.1 + 139222 0.66 0.932762
Target:  5'- -cCAGCUUCUGGU-AGGAGGcgCGCUGc -3'
miRNA:   3'- guGUCGGAGGCCGcUUCUUCa-GCGAC- -5'
29896 3' -56.3 NC_006273.1 + 105168 0.66 0.932762
Target:  5'- aGCGGCgUCC-GCGAGGAcggggaaacGGUCGCc- -3'
miRNA:   3'- gUGUCGgAGGcCGCUUCU---------UCAGCGac -5'
29896 3' -56.3 NC_006273.1 + 158807 0.66 0.932762
Target:  5'- ---cGCCUCCgGGCGAGGuGGgCGCUu -3'
miRNA:   3'- guguCGGAGG-CCGCUUCuUCaGCGAc -5'
29896 3' -56.3 NC_006273.1 + 44792 0.66 0.932762
Target:  5'- cCGCGGCCgaugggcgCCGGCGGacgugacucGGcAGcCGCUGu -3'
miRNA:   3'- -GUGUCGGa-------GGCCGCU---------UCuUCaGCGAC- -5'
29896 3' -56.3 NC_006273.1 + 116455 0.67 0.927729
Target:  5'- -cCAGUCUCCGGaCGAGGccGaaUUGCUGu -3'
miRNA:   3'- guGUCGGAGGCC-GCUUCuuC--AGCGAC- -5'
29896 3' -56.3 NC_006273.1 + 147495 0.67 0.927729
Target:  5'- -uCGGCgUgcCCGGCGAgacgGGAGGUgGCUGc -3'
miRNA:   3'- guGUCGgA--GGCCGCU----UCUUCAgCGAC- -5'
29896 3' -56.3 NC_006273.1 + 58147 0.67 0.927213
Target:  5'- aGCGGCCUCCgcaccacGGUGggGAAGUaacacucacgGUUGg -3'
miRNA:   3'- gUGUCGGAGG-------CCGCuuCUUCAg---------CGAC- -5'
29896 3' -56.3 NC_006273.1 + 103873 0.67 0.922468
Target:  5'- -cCAGCCcaugcacgUCCaGCGAGGA-GUUGCUGu -3'
miRNA:   3'- guGUCGG--------AGGcCGCUUCUuCAGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.