miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29896 5' -53.4 NC_006273.1 + 129820 0.66 0.991465
Target:  5'- gUACCcuguuuuuGCGACGGUgaagUGGAGGGCCa--- -3'
miRNA:   3'- -GUGG--------UGCUGUCGa---ACCUUUCGGcagc -5'
29896 5' -53.4 NC_006273.1 + 197201 0.66 0.991465
Target:  5'- gGCCGCGGCgcgGGCUcGGcgucccGCCGUCc -3'
miRNA:   3'- gUGGUGCUG---UCGAaCCuuu---CGGCAGc -5'
29896 5' -53.4 NC_006273.1 + 31745 0.66 0.991465
Target:  5'- gACUACGcGCAGCUUaGuGAcgugaucuacuGGGCCGUCa -3'
miRNA:   3'- gUGGUGC-UGUCGAA-C-CU-----------UUCGGCAGc -5'
29896 5' -53.4 NC_006273.1 + 142627 0.66 0.991008
Target:  5'- aCACCA-GAUGGCgcucguugaccaGGAAAGCUGUCu -3'
miRNA:   3'- -GUGGUgCUGUCGaa----------CCUUUCGGCAGc -5'
29896 5' -53.4 NC_006273.1 + 103026 0.66 0.990288
Target:  5'- aCGCCGCGGCGGCagc---GGCCG-CGg -3'
miRNA:   3'- -GUGGUGCUGUCGaaccuuUCGGCaGC- -5'
29896 5' -53.4 NC_006273.1 + 217578 0.66 0.990288
Target:  5'- gGCUucgGCGGCGGCUUuggugaguagGGAcaugccggcaAAGCCGUCu -3'
miRNA:   3'- gUGG---UGCUGUCGAA----------CCU----------UUCGGCAGc -5'
29896 5' -53.4 NC_006273.1 + 171875 0.66 0.990163
Target:  5'- aACCGCGGCGucgauguGCUUGacGAAGGUgGUCa -3'
miRNA:   3'- gUGGUGCUGU-------CGAAC--CUUUCGgCAGc -5'
29896 5' -53.4 NC_006273.1 + 140433 0.66 0.988987
Target:  5'- cCGCCGCGAgAcCc--GGAAGCCGUCGc -3'
miRNA:   3'- -GUGGUGCUgUcGaacCUUUCGGCAGC- -5'
29896 5' -53.4 NC_006273.1 + 37756 0.66 0.988987
Target:  5'- -uCCACGugcuGCAGCUgucGGcgcguaucaGGAGCCGUCa -3'
miRNA:   3'- guGGUGC----UGUCGAa--CC---------UUUCGGCAGc -5'
29896 5' -53.4 NC_006273.1 + 8241 0.66 0.988987
Target:  5'- gGCCGgGACGGggUGGGacgaGAGCCGg-- -3'
miRNA:   3'- gUGGUgCUGUCgaACCU----UUCGGCagc -5'
29896 5' -53.4 NC_006273.1 + 164656 0.66 0.988144
Target:  5'- aCACCAgcCGACuGUguccuguucgaacgUGGAGGGCgGUCGc -3'
miRNA:   3'- -GUGGU--GCUGuCGa-------------ACCUUUCGgCAGC- -5'
29896 5' -53.4 NC_006273.1 + 229523 0.66 0.987554
Target:  5'- -cCCACGACccgAGCcgaaGGAGGGCCGcCa -3'
miRNA:   3'- guGGUGCUG---UCGaa--CCUUUCGGCaGc -5'
29896 5' -53.4 NC_006273.1 + 139113 0.66 0.987554
Target:  5'- uCGCCcuCGACGGCgguacuGAAGccGCCGUCGa -3'
miRNA:   3'- -GUGGu-GCUGUCGaac---CUUU--CGGCAGC- -5'
29896 5' -53.4 NC_006273.1 + 132326 0.66 0.987554
Target:  5'- uCGCCGCGaguGCGGUUUGcaucacgaugauGGAAGCCG-CGg -3'
miRNA:   3'- -GUGGUGC---UGUCGAAC------------CUUUCGGCaGC- -5'
29896 5' -53.4 NC_006273.1 + 204714 0.66 0.987404
Target:  5'- gCACCGCGGcCGGCcgcaGGAAgccgcccGGCgCGUCGu -3'
miRNA:   3'- -GUGGUGCU-GUCGaa--CCUU-------UCG-GCAGC- -5'
29896 5' -53.4 NC_006273.1 + 85732 0.66 0.986628
Target:  5'- aCGCCGCgGGCGGCguggagGGAGAaacccgaucacuaccGCCGUUa -3'
miRNA:   3'- -GUGGUG-CUGUCGaa----CCUUU---------------CGGCAGc -5'
29896 5' -53.4 NC_006273.1 + 54956 0.66 0.985982
Target:  5'- -gUgGCGGCGGUggcgUGGAAAccGUCGUCGg -3'
miRNA:   3'- guGgUGCUGUCGa---ACCUUU--CGGCAGC- -5'
29896 5' -53.4 NC_006273.1 + 31356 0.66 0.985982
Target:  5'- aCGCCACGucucuGCGGCggcUGGAcgaaGAGCUG-CGg -3'
miRNA:   3'- -GUGGUGC-----UGUCGa--ACCU----UUCGGCaGC- -5'
29896 5' -53.4 NC_006273.1 + 167337 0.66 0.985982
Target:  5'- gGCCACGGCGGCgcUGGccGAGCCc--- -3'
miRNA:   3'- gUGGUGCUGUCGa-ACCu-UUCGGcagc -5'
29896 5' -53.4 NC_006273.1 + 129470 0.66 0.985982
Target:  5'- cCAUCGCGGCGGCggcgUGaGcgcGAGgCGUCGg -3'
miRNA:   3'- -GUGGUGCUGUCGa---AC-Cu--UUCgGCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.