Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29897 | 3' | -65 | NC_006273.1 | + | 136494 | 0.66 | 0.642969 |
Target: 5'- gAUCGCCguuugCCCGaAGCGGcuGUGgcuucucuggagacGGCCGUCa -3' miRNA: 3'- -UAGCGGa----GGGC-UCGCU--CGC--------------CCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 90927 | 0.66 | 0.636397 |
Target: 5'- -aCGCCggcgcgcgagCCCGuguaguGCGAGCc-GCCGCCa -3' miRNA: 3'- uaGCGGa---------GGGCu-----CGCUCGccCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 55771 | 0.66 | 0.636397 |
Target: 5'- -cCGcCCUCgCCGAugaguacggguaGCG-GUGGGCgGCCg -3' miRNA: 3'- uaGC-GGAG-GGCU------------CGCuCGCCCGgCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 198922 | 0.66 | 0.636397 |
Target: 5'- -aCGCCagCCCGAGCc-GCuaaGGCCGCa -3' miRNA: 3'- uaGCGGa-GGGCUCGcuCGc--CCGGCGg -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 154844 | 0.66 | 0.636397 |
Target: 5'- -aCGCacgCCCu-GCGAGCaGGCgGCCu -3' miRNA: 3'- uaGCGga-GGGcuCGCUCGcCCGgCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 148682 | 0.66 | 0.627006 |
Target: 5'- --gGCCUgCCCGAcaucGUGGGCcGGCCGgCa -3' miRNA: 3'- uagCGGA-GGGCU----CGCUCGcCCGGCgG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 120585 | 0.66 | 0.621373 |
Target: 5'- -gCGUCUUgCCGguggcGGCGAcguuuggguugcgcaGCGGGCUGCCa -3' miRNA: 3'- uaGCGGAG-GGC-----UCGCU---------------CGCCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 183866 | 0.66 | 0.617619 |
Target: 5'- --gGCCUCCgucgaGAGCGAGuuGuccucgucGCCGCCg -3' miRNA: 3'- uagCGGAGGg----CUCGCUCgcC--------CGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 199485 | 0.66 | 0.617619 |
Target: 5'- cGUUGgCUCCCGc-UGuGCuGGCCGCCg -3' miRNA: 3'- -UAGCgGAGGGCucGCuCGcCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 70826 | 0.66 | 0.617619 |
Target: 5'- cUgGCCUUCgGcacGCuGGCGGGCCGaCCg -3' miRNA: 3'- uAgCGGAGGgCu--CGcUCGCCCGGC-GG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 124039 | 0.66 | 0.617619 |
Target: 5'- -aCGCCgcugaaCCC-AGCG-GCGcGGCCGCg -3' miRNA: 3'- uaGCGGa-----GGGcUCGCuCGC-CCGGCGg -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 120498 | 0.66 | 0.617619 |
Target: 5'- -gUGCCggCCGcGCuAGCGGGCUGCa -3' miRNA: 3'- uaGCGGagGGCuCGcUCGCCCGGCGg -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 153783 | 0.66 | 0.617619 |
Target: 5'- uUCgGCCUCCgccGCGGcCGcGGCCGCCg -3' miRNA: 3'- uAG-CGGAGGgcuCGCUcGC-CCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 228742 | 0.66 | 0.608241 |
Target: 5'- -gUGUCUCaUCG-GUGAGaCGaGGCCGCCg -3' miRNA: 3'- uaGCGGAG-GGCuCGCUC-GC-CCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 108624 | 0.66 | 0.598878 |
Target: 5'- -gCGCCUCUgGAccacGCGcAGCgucaGGGCCuGCCg -3' miRNA: 3'- uaGCGGAGGgCU----CGC-UCG----CCCGG-CGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 139111 | 0.66 | 0.597943 |
Target: 5'- cGUCGCC-CUCGA-CG-GCGGuacugaaGCCGCCg -3' miRNA: 3'- -UAGCGGaGGGCUcGCuCGCC-------CGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 82173 | 0.66 | 0.589536 |
Target: 5'- --aGCCUgCUCGuuGGUGuaaGGCGGaGCCGCCg -3' miRNA: 3'- uagCGGA-GGGC--UCGC---UCGCC-CGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 129850 | 0.66 | 0.589536 |
Target: 5'- -cCGCCUCCCGAGgcaCGucgGGGCUGUg -3' miRNA: 3'- uaGCGGAGGGCUC---GCucgCCCGGCGg -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 153655 | 0.66 | 0.589536 |
Target: 5'- -gCGCagggCUCGGGCaAGC-GGCCGCCa -3' miRNA: 3'- uaGCGga--GGGCUCGcUCGcCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 229519 | 0.66 | 0.589536 |
Target: 5'- -aCGaCCcacgaCCCGAGcCGAaggaGGGCCGCCa -3' miRNA: 3'- uaGC-GGa----GGGCUC-GCUcg--CCCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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