Results 41 - 60 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29897 | 3' | -65 | NC_006273.1 | + | 124438 | 0.68 | 0.52515 |
Target: 5'- --gGCCgCgCGGGCGuGCGcGGCuCGCCg -3' miRNA: 3'- uagCGGaGgGCUCGCuCGC-CCG-GCGG- -5' |
|||||||
29897 | 3' | -65 | NC_006273.1 | + | 95285 | 0.68 | 0.52515 |
Target: 5'- uGUgGCCggaagcgCUCGGGguCGAcgGUGGGCCGCCa -3' miRNA: 3'- -UAgCGGa------GGGCUC--GCU--CGCCCGGCGG- -5' |
|||||||
29897 | 3' | -65 | NC_006273.1 | + | 221290 | 0.68 | 0.507218 |
Target: 5'- --aGCCggcggUCCGAGCcacuGAGCGguucacagccccGGCCGCCg -3' miRNA: 3'- uagCGGa----GGGCUCG----CUCGC------------CCGGCGG- -5' |
|||||||
29897 | 3' | -65 | NC_006273.1 | + | 195939 | 0.68 | 0.495703 |
Target: 5'- -aCGCCgggccacggcguccaCCGGGUaGAaccccGCGGGCCGCCg -3' miRNA: 3'- uaGCGGag-------------GGCUCG-CU-----CGCCCGGCGG- -5' |
|||||||
29897 | 3' | -65 | NC_006273.1 | + | 64769 | 0.68 | 0.489551 |
Target: 5'- --aGCUgCCCGccGGCGGGC-GGCUGCCg -3' miRNA: 3'- uagCGGaGGGC--UCGCUCGcCCGGCGG- -5' |
|||||||
29897 | 3' | -65 | NC_006273.1 | + | 96066 | 0.68 | 0.52515 |
Target: 5'- -cCGCCUCgguacccccuggCCGAgGCGAguccGCGGucGCCGCCu -3' miRNA: 3'- uaGCGGAG------------GGCU-CGCU----CGCC--CGGCGG- -5' |
|||||||
29897 | 3' | -65 | NC_006273.1 | + | 1046 | 0.68 | 0.495703 |
Target: 5'- -aCGCCgggccacggcguccaCCGGGUaGAaccccGCGGGCCGCCg -3' miRNA: 3'- uaGCGGag-------------GGCUCG-CU-----CGCCCGGCGG- -5' |
|||||||
29897 | 3' | -65 | NC_006273.1 | + | 137165 | 0.68 | 0.489551 |
Target: 5'- -aCGCCUCguCUGAGCcGG-GGuGCCGCCg -3' miRNA: 3'- uaGCGGAG--GGCUCGcUCgCC-CGGCGG- -5' |
|||||||
29897 | 3' | -65 | NC_006273.1 | + | 1992 | 0.68 | 0.497467 |
Target: 5'- cGUCGCg-CCagcGGCGAGCGgcacggagacggaGGCCGCCg -3' miRNA: 3'- -UAGCGgaGGgc-UCGCUCGC-------------CCGGCGG- -5' |
|||||||
29897 | 3' | -65 | NC_006273.1 | + | 181687 | 0.68 | 0.478223 |
Target: 5'- uGUUGCCUgaaCGAGCauucacaacucucgGAGCGGGUgGCCu -3' miRNA: 3'- -UAGCGGAgg-GCUCG--------------CUCGCCCGgCGG- -5' |
|||||||
29897 | 3' | -65 | NC_006273.1 | + | 142517 | 0.68 | 0.489551 |
Target: 5'- -cCGCCUCuuGGGCGGuucuaCGGGCCucGCUu -3' miRNA: 3'- uaGCGGAGggCUCGCUc----GCCCGG--CGG- -5' |
|||||||
29897 | 3' | -65 | NC_006273.1 | + | 170793 | 0.68 | 0.480826 |
Target: 5'- cUCGCgCUCCaaAGCGAGCGauGUCGCCc -3' miRNA: 3'- uAGCG-GAGGgcUCGCUCGCc-CGGCGG- -5' |
|||||||
29897 | 3' | -65 | NC_006273.1 | + | 131411 | 0.69 | 0.467026 |
Target: 5'- -aCGCCUCCaUGGGCGAGuUcgcgcgucugcuacuGGGCuCGCCc -3' miRNA: 3'- uaGCGGAGG-GCUCGCUC-G---------------CCCG-GCGG- -5' |
|||||||
29897 | 3' | -65 | NC_006273.1 | + | 133799 | 0.69 | 0.438402 |
Target: 5'- cGUCGUuaucUUCCCuGAGCGAGCGcgaacGCCGCg -3' miRNA: 3'- -UAGCG----GAGGG-CUCGCUCGCc----CGGCGg -5' |
|||||||
29897 | 3' | -65 | NC_006273.1 | + | 190342 | 0.69 | 0.463608 |
Target: 5'- --aGUauaggUCCGuGCGAGCaGGCCGCCg -3' miRNA: 3'- uagCGga---GGGCuCGCUCGcCCGGCGG- -5' |
|||||||
29897 | 3' | -65 | NC_006273.1 | + | 195129 | 0.69 | 0.422041 |
Target: 5'- cGUCGCC-CCagaaGAGCG-GUacgGGGCCGCa -3' miRNA: 3'- -UAGCGGaGGg---CUCGCuCG---CCCGGCGg -5' |
|||||||
29897 | 3' | -65 | NC_006273.1 | + | 13570 | 0.7 | 0.401331 |
Target: 5'- -aCGCCgggugcucacccgCCGGGCGGccCGGGCCGCCg -3' miRNA: 3'- uaGCGGag-----------GGCUCGCUc-GCCCGGCGG- -5' |
|||||||
29897 | 3' | -65 | NC_006273.1 | + | 81737 | 0.7 | 0.390451 |
Target: 5'- -cCGCUUgCCCGAGCccugcgcgGAGcCGGGCUGCg -3' miRNA: 3'- uaGCGGA-GGGCUCG--------CUC-GCCCGGCGg -5' |
|||||||
29897 | 3' | -65 | NC_006273.1 | + | 57859 | 0.7 | 0.375245 |
Target: 5'- --aGCCgCgCCGAGCcAGCGGGCCcCCg -3' miRNA: 3'- uagCGGaG-GGCUCGcUCGCCCGGcGG- -5' |
|||||||
29897 | 3' | -65 | NC_006273.1 | + | 85917 | 0.71 | 0.360446 |
Target: 5'- cAUCGCCUCCCGuccacgcaGGUGAauaaccucGCccucgGGGCCGUCg -3' miRNA: 3'- -UAGCGGAGGGC--------UCGCU--------CG-----CCCGGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home