Results 61 - 68 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 29897 | 3' | -65 | NC_006273.1 | + | 73754 | 0.71 | 0.3532 |
|
Target: 5'- --gGCCgaggCCCG-GC-AGCGGcGCCGCCa -3' miRNA: 3'- uagCGGa---GGGCuCGcUCGCC-CGGCGG- -5' |
|||||||
| 29897 | 3' | -65 | NC_006273.1 | + | 220355 | 0.72 | 0.318534 |
|
Target: 5'- -aCGCC-CCgGGGCGuGCGGGCaaaaGCUa -3' miRNA: 3'- uaGCGGaGGgCUCGCuCGCCCGg---CGG- -5' |
|||||||
| 29897 | 3' | -65 | NC_006273.1 | + | 158804 | 0.73 | 0.257036 |
|
Target: 5'- aGUCGCCU-CCGGGCGAgGUGGG-CGCUu -3' miRNA: 3'- -UAGCGGAgGGCUCGCU-CGCCCgGCGG- -5' |
|||||||
| 29897 | 3' | -65 | NC_006273.1 | + | 196884 | 0.74 | 0.234774 |
|
Target: 5'- cGUCGCCgCCagcGGCGAGCGgcacggagacggaGGCCGCCg -3' miRNA: 3'- -UAGCGGaGGgc-UCGCUCGC-------------CCGGCGG- -5' |
|||||||
| 29897 | 3' | -65 | NC_006273.1 | + | 46308 | 0.75 | 0.200981 |
|
Target: 5'- -cCGCCgCCCGGGCGcaagaAGC-GGCCGCCu -3' miRNA: 3'- uaGCGGaGGGCUCGC-----UCGcCCGGCGG- -5' |
|||||||
| 29897 | 3' | -65 | NC_006273.1 | + | 194885 | 0.75 | 0.205603 |
|
Target: 5'- gGUCGCCUgUCCGgcAGC-AGcCGGGCCGCCu -3' miRNA: 3'- -UAGCGGA-GGGC--UCGcUC-GCCCGGCGG- -5' |
|||||||
| 29897 | 3' | -65 | NC_006273.1 | + | 143511 | 0.75 | 0.192008 |
|
Target: 5'- -cUGUCUCCUGGGCGAGCauGGcGCCGCg -3' miRNA: 3'- uaGCGGAGGGCUCGCUCG--CC-CGGCGg -5' |
|||||||
| 29897 | 3' | -65 | NC_006273.1 | + | 87869 | 1.09 | 0.000776 |
|
Target: 5'- cAUCGCCUCCCGAGCGAGCGGGCCGCCg -3' miRNA: 3'- -UAGCGGAGGGCUCGCUCGCCCGGCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home