miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29897 3' -65 NC_006273.1 + 181687 0.68 0.478223
Target:  5'- uGUUGCCUgaaCGAGCauucacaacucucgGAGCGGGUgGCCu -3'
miRNA:   3'- -UAGCGGAgg-GCUCG--------------CUCGCCCGgCGG- -5'
29897 3' -65 NC_006273.1 + 201150 0.68 0.52515
Target:  5'- -cUGCCUgCCG-GCGGcccugugccGCGGGuuGCCc -3'
miRNA:   3'- uaGCGGAgGGCuCGCU---------CGCCCggCGG- -5'
29897 3' -65 NC_006273.1 + 197472 0.68 0.513466
Target:  5'- cUCGCCUCCCGcucacaacgcguGCGAgaccugcGCGaGGCCcggcGCCa -3'
miRNA:   3'- uAGCGGAGGGCu-----------CGCU-------CGC-CCGG----CGG- -5'
29897 3' -65 NC_006273.1 + 221290 0.68 0.507218
Target:  5'- --aGCCggcggUCCGAGCcacuGAGCGguucacagccccGGCCGCCg -3'
miRNA:   3'- uagCGGa----GGGCUCG----CUCGC------------CCGGCGG- -5'
29897 3' -65 NC_006273.1 + 200662 0.68 0.49835
Target:  5'- uGUCGCacgCCCGAGgaucuGGC-GGCCGCCg -3'
miRNA:   3'- -UAGCGga-GGGCUCgc---UCGcCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 1992 0.68 0.497467
Target:  5'- cGUCGCg-CCagcGGCGAGCGgcacggagacggaGGCCGCCg -3'
miRNA:   3'- -UAGCGgaGGgc-UCGCUCGC-------------CCGGCGG- -5'
29897 3' -65 NC_006273.1 + 1046 0.68 0.495703
Target:  5'- -aCGCCgggccacggcguccaCCGGGUaGAaccccGCGGGCCGCCg -3'
miRNA:   3'- uaGCGGag-------------GGCUCG-CU-----CGCCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 142517 0.68 0.489551
Target:  5'- -cCGCCUCuuGGGCGGuucuaCGGGCCucGCUu -3'
miRNA:   3'- uaGCGGAGggCUCGCUc----GCCCGG--CGG- -5'
29897 3' -65 NC_006273.1 + 195939 0.68 0.495703
Target:  5'- -aCGCCgggccacggcguccaCCGGGUaGAaccccGCGGGCCGCCg -3'
miRNA:   3'- uaGCGGag-------------GGCUCG-CU-----CGCCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 189512 0.68 0.507218
Target:  5'- -cCGCCgCgCUGuGUGAGaguuccaGGGCCGCCg -3'
miRNA:   3'- uaGCGGaG-GGCuCGCUCg------CCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 137165 0.68 0.489551
Target:  5'- -aCGCCUCguCUGAGCcGG-GGuGCCGCCg -3'
miRNA:   3'- uaGCGGAG--GGCUCGcUCgCC-CGGCGG- -5'
29897 3' -65 NC_006273.1 + 64769 0.68 0.489551
Target:  5'- --aGCUgCCCGccGGCGGGC-GGCUGCCg -3'
miRNA:   3'- uagCGGaGGGC--UCGCUCGcCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 73859 0.67 0.570934
Target:  5'- -cCGCCguucgCgUGAGCGcggccgacauGCGGGCgCGCCa -3'
miRNA:   3'- uaGCGGa----GgGCUCGCu---------CGCCCG-GCGG- -5'
29897 3' -65 NC_006273.1 + 22255 0.67 0.534206
Target:  5'- -gCGCCgg-CGAGCGAcGCGGcuCCGCCg -3'
miRNA:   3'- uaGCGGaggGCUCGCU-CGCCc-GGCGG- -5'
29897 3' -65 NC_006273.1 + 167086 0.67 0.543317
Target:  5'- gAUCgGCCUCgucgCUGAGCGcuuucCGGGCCGCg -3'
miRNA:   3'- -UAG-CGGAG----GGCUCGCuc---GCCCGGCGg -5'
29897 3' -65 NC_006273.1 + 141175 0.67 0.543317
Target:  5'- -gCGCCggg-GGGCG-GCGGGCaCGCCg -3'
miRNA:   3'- uaGCGGagggCUCGCuCGCCCG-GCGG- -5'
29897 3' -65 NC_006273.1 + 130214 0.67 0.543317
Target:  5'- -cCGgCUaCCUGGGCGAggccGCGGcGCCGCg -3'
miRNA:   3'- uaGCgGA-GGGCUCGCU----CGCC-CGGCGg -5'
29897 3' -65 NC_006273.1 + 105376 0.67 0.534206
Target:  5'- uGUCGCCgucaCCCGAGCccgugcaacAGCa-GCCGCCg -3'
miRNA:   3'- -UAGCGGa---GGGCUCGc--------UCGccCGGCGG- -5'
29897 3' -65 NC_006273.1 + 178076 0.67 0.570934
Target:  5'- aGUCGUacucgggaUCuCUGAGCGAGaCGGGuuGCa -3'
miRNA:   3'- -UAGCGg-------AG-GGCUCGCUC-GCCCggCGg -5'
29897 3' -65 NC_006273.1 + 188156 0.67 0.570934
Target:  5'- gGUCGCCgagUUCCGGGuCGGGCacauccauGGCuCGCCg -3'
miRNA:   3'- -UAGCGG---AGGGCUC-GCUCGc-------CCG-GCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.