miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29897 3' -65 NC_006273.1 + 87869 1.09 0.000776
Target:  5'- cAUCGCCUCCCGAGCGAGCGGGCCGCCg -3'
miRNA:   3'- -UAGCGGAGGGCUCGCUCGCCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 143511 0.75 0.192008
Target:  5'- -cUGUCUCCUGGGCGAGCauGGcGCCGCg -3'
miRNA:   3'- uaGCGGAGGGCUCGCUCG--CC-CGGCGg -5'
29897 3' -65 NC_006273.1 + 46308 0.75 0.200981
Target:  5'- -cCGCCgCCCGGGCGcaagaAGC-GGCCGCCu -3'
miRNA:   3'- uaGCGGaGGGCUCGC-----UCGcCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 194885 0.75 0.205603
Target:  5'- gGUCGCCUgUCCGgcAGC-AGcCGGGCCGCCu -3'
miRNA:   3'- -UAGCGGA-GGGC--UCGcUC-GCCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 196884 0.74 0.234774
Target:  5'- cGUCGCCgCCagcGGCGAGCGgcacggagacggaGGCCGCCg -3'
miRNA:   3'- -UAGCGGaGGgc-UCGCUCGC-------------CCGGCGG- -5'
29897 3' -65 NC_006273.1 + 158804 0.73 0.257036
Target:  5'- aGUCGCCU-CCGGGCGAgGUGGG-CGCUu -3'
miRNA:   3'- -UAGCGGAgGGCUCGCU-CGCCCgGCGG- -5'
29897 3' -65 NC_006273.1 + 220355 0.72 0.318534
Target:  5'- -aCGCC-CCgGGGCGuGCGGGCaaaaGCUa -3'
miRNA:   3'- uaGCGGaGGgCUCGCuCGCCCGg---CGG- -5'
29897 3' -65 NC_006273.1 + 73754 0.71 0.3532
Target:  5'- --gGCCgaggCCCG-GC-AGCGGcGCCGCCa -3'
miRNA:   3'- uagCGGa---GGGCuCGcUCGCC-CGGCGG- -5'
29897 3' -65 NC_006273.1 + 85917 0.71 0.360446
Target:  5'- cAUCGCCUCCCGuccacgcaGGUGAauaaccucGCccucgGGGCCGUCg -3'
miRNA:   3'- -UAGCGGAGGGC--------UCGCU--------CG-----CCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 57859 0.7 0.375245
Target:  5'- --aGCCgCgCCGAGCcAGCGGGCCcCCg -3'
miRNA:   3'- uagCGGaG-GGCUCGcUCGCCCGGcGG- -5'
29897 3' -65 NC_006273.1 + 81737 0.7 0.390451
Target:  5'- -cCGCUUgCCCGAGCccugcgcgGAGcCGGGCUGCg -3'
miRNA:   3'- uaGCGGA-GGGCUCG--------CUC-GCCCGGCGg -5'
29897 3' -65 NC_006273.1 + 13570 0.7 0.401331
Target:  5'- -aCGCCgggugcucacccgCCGGGCGGccCGGGCCGCCg -3'
miRNA:   3'- uaGCGGag-----------GGCUCGCUc-GCCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 195129 0.69 0.422041
Target:  5'- cGUCGCC-CCagaaGAGCG-GUacgGGGCCGCa -3'
miRNA:   3'- -UAGCGGaGGg---CUCGCuCG---CCCGGCGg -5'
29897 3' -65 NC_006273.1 + 133799 0.69 0.438402
Target:  5'- cGUCGUuaucUUCCCuGAGCGAGCGcgaacGCCGCg -3'
miRNA:   3'- -UAGCG----GAGGG-CUCGCUCGCc----CGGCGg -5'
29897 3' -65 NC_006273.1 + 190342 0.69 0.463608
Target:  5'- --aGUauaggUCCGuGCGAGCaGGCCGCCg -3'
miRNA:   3'- uagCGga---GGGCuCGCUCGcCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 131411 0.69 0.467026
Target:  5'- -aCGCCUCCaUGGGCGAGuUcgcgcgucugcuacuGGGCuCGCCc -3'
miRNA:   3'- uaGCGGAGG-GCUCGCUC-G---------------CCCG-GCGG- -5'
29897 3' -65 NC_006273.1 + 181687 0.68 0.478223
Target:  5'- uGUUGCCUgaaCGAGCauucacaacucucgGAGCGGGUgGCCu -3'
miRNA:   3'- -UAGCGGAgg-GCUCG--------------CUCGCCCGgCGG- -5'
29897 3' -65 NC_006273.1 + 170793 0.68 0.480826
Target:  5'- cUCGCgCUCCaaAGCGAGCGauGUCGCCc -3'
miRNA:   3'- uAGCG-GAGGgcUCGCUCGCc-CGGCGG- -5'
29897 3' -65 NC_006273.1 + 137165 0.68 0.489551
Target:  5'- -aCGCCUCguCUGAGCcGG-GGuGCCGCCg -3'
miRNA:   3'- uaGCGGAG--GGCUCGcUCgCC-CGGCGG- -5'
29897 3' -65 NC_006273.1 + 64769 0.68 0.489551
Target:  5'- --aGCUgCCCGccGGCGGGC-GGCUGCCg -3'
miRNA:   3'- uagCGGaGGGC--UCGCUCGcCCGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.