Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29897 | 3' | -65 | NC_006273.1 | + | 183866 | 0.66 | 0.617619 |
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Target: 5'- --gGCCUCCgucgaGAGCGAGuuGuccucgucGCCGCCg -3' miRNA: 3'- uagCGGAGGg----CUCGCUCgcC--------CGGCGG- -5' |
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| 29897 | 3' | -65 | NC_006273.1 | + | 120585 | 0.66 | 0.621373 |
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Target: 5'- -gCGUCUUgCCGguggcGGCGAcguuuggguugcgcaGCGGGCUGCCa -3' miRNA: 3'- uaGCGGAG-GGC-----UCGCU---------------CGCCCGGCGG- -5' |
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| 29897 | 3' | -65 | NC_006273.1 | + | 148682 | 0.66 | 0.627006 |
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Target: 5'- --gGCCUgCCCGAcaucGUGGGCcGGCCGgCa -3' miRNA: 3'- uagCGGA-GGGCU----CGCUCGcCCGGCgG- -5' |
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| 29897 | 3' | -65 | NC_006273.1 | + | 90927 | 0.66 | 0.636397 |
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Target: 5'- -aCGCCggcgcgcgagCCCGuguaguGCGAGCc-GCCGCCa -3' miRNA: 3'- uaGCGGa---------GGGCu-----CGCUCGccCGGCGG- -5' |
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| 29897 | 3' | -65 | NC_006273.1 | + | 154844 | 0.66 | 0.636397 |
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Target: 5'- -aCGCacgCCCu-GCGAGCaGGCgGCCu -3' miRNA: 3'- uaGCGga-GGGcuCGCUCGcCCGgCGG- -5' |
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| 29897 | 3' | -65 | NC_006273.1 | + | 198922 | 0.66 | 0.636397 |
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Target: 5'- -aCGCCagCCCGAGCc-GCuaaGGCCGCa -3' miRNA: 3'- uaGCGGa-GGGCUCGcuCGc--CCGGCGg -5' |
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| 29897 | 3' | -65 | NC_006273.1 | + | 55771 | 0.66 | 0.636397 |
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Target: 5'- -cCGcCCUCgCCGAugaguacggguaGCG-GUGGGCgGCCg -3' miRNA: 3'- uaGC-GGAG-GGCU------------CGCuCGCCCGgCGG- -5' |
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| 29897 | 3' | -65 | NC_006273.1 | + | 136494 | 0.66 | 0.642969 |
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Target: 5'- gAUCGCCguuugCCCGaAGCGGcuGUGgcuucucuggagacGGCCGUCa -3' miRNA: 3'- -UAGCGGa----GGGC-UCGCU--CGC--------------CCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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