Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29897 | 3' | -65 | NC_006273.1 | + | 82173 | 0.66 | 0.589536 |
Target: 5'- --aGCCUgCUCGuuGGUGuaaGGCGGaGCCGCCg -3' miRNA: 3'- uagCGGA-GGGC--UCGC---UCGCC-CGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 153655 | 0.66 | 0.589536 |
Target: 5'- -gCGCagggCUCGGGCaAGC-GGCCGCCa -3' miRNA: 3'- uaGCGga--GGGCUCGcUCGcCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 23615 | 0.67 | 0.580219 |
Target: 5'- cGUCGCCg-CCGAGCc--CGGGCCuGCUc -3' miRNA: 3'- -UAGCGGagGGCUCGcucGCCCGG-CGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 137963 | 0.67 | 0.580219 |
Target: 5'- cGUCGUCggUCUCGAGCGccccccgauGUaGGGCCGCUc -3' miRNA: 3'- -UAGCGG--AGGGCUCGCu--------CG-CCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 188156 | 0.67 | 0.570934 |
Target: 5'- gGUCGCCgagUUCCGGGuCGGGCacauccauGGCuCGCCg -3' miRNA: 3'- -UAGCGG---AGGGCUC-GCUCGc-------CCG-GCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 73859 | 0.67 | 0.570934 |
Target: 5'- -cCGCCguucgCgUGAGCGcggccgacauGCGGGCgCGCCa -3' miRNA: 3'- uaGCGGa----GgGCUCGCu---------CGCCCG-GCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 86698 | 0.67 | 0.570934 |
Target: 5'- cUUGCCggCCGAGCccacgaugucGGGCaGGCCGCa -3' miRNA: 3'- uAGCGGagGGCUCG----------CUCGcCCGGCGg -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 178076 | 0.67 | 0.570934 |
Target: 5'- aGUCGUacucgggaUCuCUGAGCGAGaCGGGuuGCa -3' miRNA: 3'- -UAGCGg-------AG-GGCUCGCUC-GCCCggCGg -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 37668 | 0.67 | 0.561686 |
Target: 5'- gGUCGUCaaCUGuGCuGAGCGGG-CGCCa -3' miRNA: 3'- -UAGCGGagGGCuCG-CUCGCCCgGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 179255 | 0.67 | 0.552479 |
Target: 5'- gGUCGCCgccuccgcggCCCGuuuCGAcgaaauccgGCGGcGCCGCCa -3' miRNA: 3'- -UAGCGGa---------GGGCuc-GCU---------CGCC-CGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 89348 | 0.67 | 0.552479 |
Target: 5'- -gCGCggagUCCUGGGUGuGuCGGGCCGCg -3' miRNA: 3'- uaGCGg---AGGGCUCGCuC-GCCCGGCGg -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 141175 | 0.67 | 0.543317 |
Target: 5'- -gCGCCggg-GGGCG-GCGGGCaCGCCg -3' miRNA: 3'- uaGCGGagggCUCGCuCGCCCG-GCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 130214 | 0.67 | 0.543317 |
Target: 5'- -cCGgCUaCCUGGGCGAggccGCGGcGCCGCg -3' miRNA: 3'- uaGCgGA-GGGCUCGCU----CGCC-CGGCGg -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 167086 | 0.67 | 0.543317 |
Target: 5'- gAUCgGCCUCgucgCUGAGCGcuuucCGGGCCGCg -3' miRNA: 3'- -UAG-CGGAG----GGCUCGCuc---GCCCGGCGg -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 22255 | 0.67 | 0.534206 |
Target: 5'- -gCGCCgg-CGAGCGAcGCGGcuCCGCCg -3' miRNA: 3'- uaGCGGaggGCUCGCU-CGCCc-GGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 105376 | 0.67 | 0.534206 |
Target: 5'- uGUCGCCgucaCCCGAGCccgugcaacAGCa-GCCGCCg -3' miRNA: 3'- -UAGCGGa---GGGCUCGc--------UCGccCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 95285 | 0.68 | 0.52515 |
Target: 5'- uGUgGCCggaagcgCUCGGGguCGAcgGUGGGCCGCCa -3' miRNA: 3'- -UAgCGGa------GGGCUC--GCU--CGCCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 96066 | 0.68 | 0.52515 |
Target: 5'- -cCGCCUCgguacccccuggCCGAgGCGAguccGCGGucGCCGCCu -3' miRNA: 3'- uaGCGGAG------------GGCU-CGCU----CGCC--CGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 124438 | 0.68 | 0.52515 |
Target: 5'- --gGCCgCgCGGGCGuGCGcGGCuCGCCg -3' miRNA: 3'- uagCGGaGgGCUCGCuCGC-CCG-GCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 201150 | 0.68 | 0.52515 |
Target: 5'- -cUGCCUgCCG-GCGGcccugugccGCGGGuuGCCc -3' miRNA: 3'- uaGCGGAgGGCuCGCU---------CGCCCggCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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