miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29897 3' -65 NC_006273.1 + 1046 0.68 0.495703
Target:  5'- -aCGCCgggccacggcguccaCCGGGUaGAaccccGCGGGCCGCCg -3'
miRNA:   3'- uaGCGGag-------------GGCUCG-CU-----CGCCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 1992 0.68 0.497467
Target:  5'- cGUCGCg-CCagcGGCGAGCGgcacggagacggaGGCCGCCg -3'
miRNA:   3'- -UAGCGgaGGgc-UCGCUCGC-------------CCGGCGG- -5'
29897 3' -65 NC_006273.1 + 13570 0.7 0.401331
Target:  5'- -aCGCCgggugcucacccgCCGGGCGGccCGGGCCGCCg -3'
miRNA:   3'- uaGCGGag-----------GGCUCGCUc-GCCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 21249 0.66 0.589536
Target:  5'- gAUCGCCUg--GAGCGAGUGGGgcaaCUGCUg -3'
miRNA:   3'- -UAGCGGAgggCUCGCUCGCCC----GGCGG- -5'
29897 3' -65 NC_006273.1 + 22255 0.67 0.534206
Target:  5'- -gCGCCgg-CGAGCGAcGCGGcuCCGCCg -3'
miRNA:   3'- uaGCGGaggGCUCGCU-CGCCc-GGCGG- -5'
29897 3' -65 NC_006273.1 + 23615 0.67 0.580219
Target:  5'- cGUCGCCg-CCGAGCc--CGGGCCuGCUc -3'
miRNA:   3'- -UAGCGGagGGCUCGcucGCCCGG-CGG- -5'
29897 3' -65 NC_006273.1 + 37668 0.67 0.561686
Target:  5'- gGUCGUCaaCUGuGCuGAGCGGG-CGCCa -3'
miRNA:   3'- -UAGCGGagGGCuCG-CUCGCCCgGCGG- -5'
29897 3' -65 NC_006273.1 + 46308 0.75 0.200981
Target:  5'- -cCGCCgCCCGGGCGcaagaAGC-GGCCGCCu -3'
miRNA:   3'- uaGCGGaGGGCUCGC-----UCGcCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 55771 0.66 0.636397
Target:  5'- -cCGcCCUCgCCGAugaguacggguaGCG-GUGGGCgGCCg -3'
miRNA:   3'- uaGC-GGAG-GGCU------------CGCuCGCCCGgCGG- -5'
29897 3' -65 NC_006273.1 + 57859 0.7 0.375245
Target:  5'- --aGCCgCgCCGAGCcAGCGGGCCcCCg -3'
miRNA:   3'- uagCGGaG-GGCUCGcUCGCCCGGcGG- -5'
29897 3' -65 NC_006273.1 + 64769 0.68 0.489551
Target:  5'- --aGCUgCCCGccGGCGGGC-GGCUGCCg -3'
miRNA:   3'- uagCGGaGGGC--UCGCUCGcCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 70826 0.66 0.617619
Target:  5'- cUgGCCUUCgGcacGCuGGCGGGCCGaCCg -3'
miRNA:   3'- uAgCGGAGGgCu--CGcUCGCCCGGC-GG- -5'
29897 3' -65 NC_006273.1 + 73754 0.71 0.3532
Target:  5'- --gGCCgaggCCCG-GC-AGCGGcGCCGCCa -3'
miRNA:   3'- uagCGGa---GGGCuCGcUCGCC-CGGCGG- -5'
29897 3' -65 NC_006273.1 + 73859 0.67 0.570934
Target:  5'- -cCGCCguucgCgUGAGCGcggccgacauGCGGGCgCGCCa -3'
miRNA:   3'- uaGCGGa----GgGCUCGCu---------CGCCCG-GCGG- -5'
29897 3' -65 NC_006273.1 + 81737 0.7 0.390451
Target:  5'- -cCGCUUgCCCGAGCccugcgcgGAGcCGGGCUGCg -3'
miRNA:   3'- uaGCGGA-GGGCUCG--------CUC-GCCCGGCGg -5'
29897 3' -65 NC_006273.1 + 82173 0.66 0.589536
Target:  5'- --aGCCUgCUCGuuGGUGuaaGGCGGaGCCGCCg -3'
miRNA:   3'- uagCGGA-GGGC--UCGC---UCGCC-CGGCGG- -5'
29897 3' -65 NC_006273.1 + 85917 0.71 0.360446
Target:  5'- cAUCGCCUCCCGuccacgcaGGUGAauaaccucGCccucgGGGCCGUCg -3'
miRNA:   3'- -UAGCGGAGGGC--------UCGCU--------CG-----CCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 86698 0.67 0.570934
Target:  5'- cUUGCCggCCGAGCccacgaugucGGGCaGGCCGCa -3'
miRNA:   3'- uAGCGGagGGCUCG----------CUCGcCCGGCGg -5'
29897 3' -65 NC_006273.1 + 87869 1.09 0.000776
Target:  5'- cAUCGCCUCCCGAGCGAGCGGGCCGCCg -3'
miRNA:   3'- -UAGCGGAGGGCUCGCUCGCCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 89348 0.67 0.552479
Target:  5'- -gCGCggagUCCUGGGUGuGuCGGGCCGCg -3'
miRNA:   3'- uaGCGg---AGGGCUCGCuC-GCCCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.