miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29897 3' -65 NC_006273.1 + 90927 0.66 0.636397
Target:  5'- -aCGCCggcgcgcgagCCCGuguaguGCGAGCc-GCCGCCa -3'
miRNA:   3'- uaGCGGa---------GGGCu-----CGCUCGccCGGCGG- -5'
29897 3' -65 NC_006273.1 + 95285 0.68 0.52515
Target:  5'- uGUgGCCggaagcgCUCGGGguCGAcgGUGGGCCGCCa -3'
miRNA:   3'- -UAgCGGa------GGGCUC--GCU--CGCCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 96066 0.68 0.52515
Target:  5'- -cCGCCUCgguacccccuggCCGAgGCGAguccGCGGucGCCGCCu -3'
miRNA:   3'- uaGCGGAG------------GGCU-CGCU----CGCC--CGGCGG- -5'
29897 3' -65 NC_006273.1 + 105376 0.67 0.534206
Target:  5'- uGUCGCCgucaCCCGAGCccgugcaacAGCa-GCCGCCg -3'
miRNA:   3'- -UAGCGGa---GGGCUCGc--------UCGccCGGCGG- -5'
29897 3' -65 NC_006273.1 + 108624 0.66 0.598878
Target:  5'- -gCGCCUCUgGAccacGCGcAGCgucaGGGCCuGCCg -3'
miRNA:   3'- uaGCGGAGGgCU----CGC-UCG----CCCGG-CGG- -5'
29897 3' -65 NC_006273.1 + 112537 0.66 0.589536
Target:  5'- cGUCGCCgcCCCGucugacGCGGucgccGCGucagcGGCCGCCg -3'
miRNA:   3'- -UAGCGGa-GGGCu-----CGCU-----CGC-----CCGGCGG- -5'
29897 3' -65 NC_006273.1 + 120498 0.66 0.617619
Target:  5'- -gUGCCggCCGcGCuAGCGGGCUGCa -3'
miRNA:   3'- uaGCGGagGGCuCGcUCGCCCGGCGg -5'
29897 3' -65 NC_006273.1 + 120585 0.66 0.621373
Target:  5'- -gCGUCUUgCCGguggcGGCGAcguuuggguugcgcaGCGGGCUGCCa -3'
miRNA:   3'- uaGCGGAG-GGC-----UCGCU---------------CGCCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 124039 0.66 0.617619
Target:  5'- -aCGCCgcugaaCCC-AGCG-GCGcGGCCGCg -3'
miRNA:   3'- uaGCGGa-----GGGcUCGCuCGC-CCGGCGg -5'
29897 3' -65 NC_006273.1 + 124438 0.68 0.52515
Target:  5'- --gGCCgCgCGGGCGuGCGcGGCuCGCCg -3'
miRNA:   3'- uagCGGaGgGCUCGCuCGC-CCG-GCGG- -5'
29897 3' -65 NC_006273.1 + 129850 0.66 0.589536
Target:  5'- -cCGCCUCCCGAGgcaCGucgGGGCUGUg -3'
miRNA:   3'- uaGCGGAGGGCUC---GCucgCCCGGCGg -5'
29897 3' -65 NC_006273.1 + 130214 0.67 0.543317
Target:  5'- -cCGgCUaCCUGGGCGAggccGCGGcGCCGCg -3'
miRNA:   3'- uaGCgGA-GGGCUCGCU----CGCC-CGGCGg -5'
29897 3' -65 NC_006273.1 + 131411 0.69 0.467026
Target:  5'- -aCGCCUCCaUGGGCGAGuUcgcgcgucugcuacuGGGCuCGCCc -3'
miRNA:   3'- uaGCGGAGG-GCUCGCUC-G---------------CCCG-GCGG- -5'
29897 3' -65 NC_006273.1 + 133799 0.69 0.438402
Target:  5'- cGUCGUuaucUUCCCuGAGCGAGCGcgaacGCCGCg -3'
miRNA:   3'- -UAGCG----GAGGG-CUCGCUCGCc----CGGCGg -5'
29897 3' -65 NC_006273.1 + 136494 0.66 0.642969
Target:  5'- gAUCGCCguuugCCCGaAGCGGcuGUGgcuucucuggagacGGCCGUCa -3'
miRNA:   3'- -UAGCGGa----GGGC-UCGCU--CGC--------------CCGGCGG- -5'
29897 3' -65 NC_006273.1 + 137165 0.68 0.489551
Target:  5'- -aCGCCUCguCUGAGCcGG-GGuGCCGCCg -3'
miRNA:   3'- uaGCGGAG--GGCUCGcUCgCC-CGGCGG- -5'
29897 3' -65 NC_006273.1 + 137963 0.67 0.580219
Target:  5'- cGUCGUCggUCUCGAGCGccccccgauGUaGGGCCGCUc -3'
miRNA:   3'- -UAGCGG--AGGGCUCGCu--------CG-CCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 139111 0.66 0.597943
Target:  5'- cGUCGCC-CUCGA-CG-GCGGuacugaaGCCGCCg -3'
miRNA:   3'- -UAGCGGaGGGCUcGCuCGCC-------CGGCGG- -5'
29897 3' -65 NC_006273.1 + 141175 0.67 0.543317
Target:  5'- -gCGCCggg-GGGCG-GCGGGCaCGCCg -3'
miRNA:   3'- uaGCGGagggCUCGCuCGCCCG-GCGG- -5'
29897 3' -65 NC_006273.1 + 142517 0.68 0.489551
Target:  5'- -cCGCCUCuuGGGCGGuucuaCGGGCCucGCUu -3'
miRNA:   3'- uaGCGGAGggCUCGCUc----GCCCGG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.