miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29897 3' -65 NC_006273.1 + 143511 0.75 0.192008
Target:  5'- -cUGUCUCCUGGGCGAGCauGGcGCCGCg -3'
miRNA:   3'- uaGCGGAGGGCUCGCUCG--CC-CGGCGg -5'
29897 3' -65 NC_006273.1 + 148682 0.66 0.627006
Target:  5'- --gGCCUgCCCGAcaucGUGGGCcGGCCGgCa -3'
miRNA:   3'- uagCGGA-GGGCU----CGCUCGcCCGGCgG- -5'
29897 3' -65 NC_006273.1 + 153655 0.66 0.589536
Target:  5'- -gCGCagggCUCGGGCaAGC-GGCCGCCa -3'
miRNA:   3'- uaGCGga--GGGCUCGcUCGcCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 153783 0.66 0.617619
Target:  5'- uUCgGCCUCCgccGCGGcCGcGGCCGCCg -3'
miRNA:   3'- uAG-CGGAGGgcuCGCUcGC-CCGGCGG- -5'
29897 3' -65 NC_006273.1 + 154844 0.66 0.636397
Target:  5'- -aCGCacgCCCu-GCGAGCaGGCgGCCu -3'
miRNA:   3'- uaGCGga-GGGcuCGCUCGcCCGgCGG- -5'
29897 3' -65 NC_006273.1 + 158804 0.73 0.257036
Target:  5'- aGUCGCCU-CCGGGCGAgGUGGG-CGCUu -3'
miRNA:   3'- -UAGCGGAgGGCUCGCU-CGCCCgGCGG- -5'
29897 3' -65 NC_006273.1 + 167086 0.67 0.543317
Target:  5'- gAUCgGCCUCgucgCUGAGCGcuuucCGGGCCGCg -3'
miRNA:   3'- -UAG-CGGAG----GGCUCGCuc---GCCCGGCGg -5'
29897 3' -65 NC_006273.1 + 170793 0.68 0.480826
Target:  5'- cUCGCgCUCCaaAGCGAGCGauGUCGCCc -3'
miRNA:   3'- uAGCG-GAGGgcUCGCUCGCc-CGGCGG- -5'
29897 3' -65 NC_006273.1 + 178076 0.67 0.570934
Target:  5'- aGUCGUacucgggaUCuCUGAGCGAGaCGGGuuGCa -3'
miRNA:   3'- -UAGCGg-------AG-GGCUCGCUC-GCCCggCGg -5'
29897 3' -65 NC_006273.1 + 179255 0.67 0.552479
Target:  5'- gGUCGCCgccuccgcggCCCGuuuCGAcgaaauccgGCGGcGCCGCCa -3'
miRNA:   3'- -UAGCGGa---------GGGCuc-GCU---------CGCC-CGGCGG- -5'
29897 3' -65 NC_006273.1 + 181687 0.68 0.478223
Target:  5'- uGUUGCCUgaaCGAGCauucacaacucucgGAGCGGGUgGCCu -3'
miRNA:   3'- -UAGCGGAgg-GCUCG--------------CUCGCCCGgCGG- -5'
29897 3' -65 NC_006273.1 + 183866 0.66 0.617619
Target:  5'- --gGCCUCCgucgaGAGCGAGuuGuccucgucGCCGCCg -3'
miRNA:   3'- uagCGGAGGg----CUCGCUCgcC--------CGGCGG- -5'
29897 3' -65 NC_006273.1 + 188156 0.67 0.570934
Target:  5'- gGUCGCCgagUUCCGGGuCGGGCacauccauGGCuCGCCg -3'
miRNA:   3'- -UAGCGG---AGGGCUC-GCUCGc-------CCG-GCGG- -5'
29897 3' -65 NC_006273.1 + 189512 0.68 0.507218
Target:  5'- -cCGCCgCgCUGuGUGAGaguuccaGGGCCGCCg -3'
miRNA:   3'- uaGCGGaG-GGCuCGCUCg------CCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 190342 0.69 0.463608
Target:  5'- --aGUauaggUCCGuGCGAGCaGGCCGCCg -3'
miRNA:   3'- uagCGga---GGGCuCGCUCGcCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 194885 0.75 0.205603
Target:  5'- gGUCGCCUgUCCGgcAGC-AGcCGGGCCGCCu -3'
miRNA:   3'- -UAGCGGA-GGGC--UCGcUC-GCCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 195129 0.69 0.422041
Target:  5'- cGUCGCC-CCagaaGAGCG-GUacgGGGCCGCa -3'
miRNA:   3'- -UAGCGGaGGg---CUCGCuCG---CCCGGCGg -5'
29897 3' -65 NC_006273.1 + 195939 0.68 0.495703
Target:  5'- -aCGCCgggccacggcguccaCCGGGUaGAaccccGCGGGCCGCCg -3'
miRNA:   3'- uaGCGGag-------------GGCUCG-CU-----CGCCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 196884 0.74 0.234774
Target:  5'- cGUCGCCgCCagcGGCGAGCGgcacggagacggaGGCCGCCg -3'
miRNA:   3'- -UAGCGGaGGgc-UCGCUCGC-------------CCGGCGG- -5'
29897 3' -65 NC_006273.1 + 197472 0.68 0.513466
Target:  5'- cUCGCCUCCCGcucacaacgcguGCGAgaccugcGCGaGGCCcggcGCCa -3'
miRNA:   3'- uAGCGGAGGGCu-----------CGCU-------CGC-CCGG----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.