Results 61 - 68 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29897 | 3' | -65 | NC_006273.1 | + | 198922 | 0.66 | 0.636397 |
|
Target: 5'- -aCGCCagCCCGAGCc-GCuaaGGCCGCa -3' miRNA: 3'- uaGCGGa-GGGCUCGcuCGc--CCGGCGg -5' |
|||||||
| 29897 | 3' | -65 | NC_006273.1 | + | 199485 | 0.66 | 0.617619 |
|
Target: 5'- cGUUGgCUCCCGc-UGuGCuGGCCGCCg -3' miRNA: 3'- -UAGCgGAGGGCucGCuCGcCCGGCGG- -5' |
|||||||
| 29897 | 3' | -65 | NC_006273.1 | + | 200662 | 0.68 | 0.49835 |
|
Target: 5'- uGUCGCacgCCCGAGgaucuGGC-GGCCGCCg -3' miRNA: 3'- -UAGCGga-GGGCUCgc---UCGcCCGGCGG- -5' |
|||||||
| 29897 | 3' | -65 | NC_006273.1 | + | 201150 | 0.68 | 0.52515 |
|
Target: 5'- -cUGCCUgCCG-GCGGcccugugccGCGGGuuGCCc -3' miRNA: 3'- uaGCGGAgGGCuCGCU---------CGCCCggCGG- -5' |
|||||||
| 29897 | 3' | -65 | NC_006273.1 | + | 220355 | 0.72 | 0.318534 |
|
Target: 5'- -aCGCC-CCgGGGCGuGCGGGCaaaaGCUa -3' miRNA: 3'- uaGCGGaGGgCUCGCuCGCCCGg---CGG- -5' |
|||||||
| 29897 | 3' | -65 | NC_006273.1 | + | 221290 | 0.68 | 0.507218 |
|
Target: 5'- --aGCCggcggUCCGAGCcacuGAGCGguucacagccccGGCCGCCg -3' miRNA: 3'- uagCGGa----GGGCUCG----CUCGC------------CCGGCGG- -5' |
|||||||
| 29897 | 3' | -65 | NC_006273.1 | + | 228742 | 0.66 | 0.608241 |
|
Target: 5'- -gUGUCUCaUCG-GUGAGaCGaGGCCGCCg -3' miRNA: 3'- uaGCGGAG-GGCuCGCUC-GC-CCGGCGG- -5' |
|||||||
| 29897 | 3' | -65 | NC_006273.1 | + | 229519 | 0.66 | 0.589536 |
|
Target: 5'- -aCGaCCcacgaCCCGAGcCGAaggaGGGCCGCCa -3' miRNA: 3'- uaGC-GGa----GGGCUC-GCUcg--CCCGGCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home