miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29897 3' -65 NC_006273.1 + 170793 0.68 0.480826
Target:  5'- cUCGCgCUCCaaAGCGAGCGauGUCGCCc -3'
miRNA:   3'- uAGCG-GAGGgcUCGCUCGCc-CGGCGG- -5'
29897 3' -65 NC_006273.1 + 167086 0.67 0.543317
Target:  5'- gAUCgGCCUCgucgCUGAGCGcuuucCGGGCCGCg -3'
miRNA:   3'- -UAG-CGGAG----GGCUCGCuc---GCCCGGCGg -5'
29897 3' -65 NC_006273.1 + 158804 0.73 0.257036
Target:  5'- aGUCGCCU-CCGGGCGAgGUGGG-CGCUu -3'
miRNA:   3'- -UAGCGGAgGGCUCGCU-CGCCCgGCGG- -5'
29897 3' -65 NC_006273.1 + 154844 0.66 0.636397
Target:  5'- -aCGCacgCCCu-GCGAGCaGGCgGCCu -3'
miRNA:   3'- uaGCGga-GGGcuCGCUCGcCCGgCGG- -5'
29897 3' -65 NC_006273.1 + 153783 0.66 0.617619
Target:  5'- uUCgGCCUCCgccGCGGcCGcGGCCGCCg -3'
miRNA:   3'- uAG-CGGAGGgcuCGCUcGC-CCGGCGG- -5'
29897 3' -65 NC_006273.1 + 153655 0.66 0.589536
Target:  5'- -gCGCagggCUCGGGCaAGC-GGCCGCCa -3'
miRNA:   3'- uaGCGga--GGGCUCGcUCGcCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 148682 0.66 0.627006
Target:  5'- --gGCCUgCCCGAcaucGUGGGCcGGCCGgCa -3'
miRNA:   3'- uagCGGA-GGGCU----CGCUCGcCCGGCgG- -5'
29897 3' -65 NC_006273.1 + 143511 0.75 0.192008
Target:  5'- -cUGUCUCCUGGGCGAGCauGGcGCCGCg -3'
miRNA:   3'- uaGCGGAGGGCUCGCUCG--CC-CGGCGg -5'
29897 3' -65 NC_006273.1 + 142517 0.68 0.489551
Target:  5'- -cCGCCUCuuGGGCGGuucuaCGGGCCucGCUu -3'
miRNA:   3'- uaGCGGAGggCUCGCUc----GCCCGG--CGG- -5'
29897 3' -65 NC_006273.1 + 141175 0.67 0.543317
Target:  5'- -gCGCCggg-GGGCG-GCGGGCaCGCCg -3'
miRNA:   3'- uaGCGGagggCUCGCuCGCCCG-GCGG- -5'
29897 3' -65 NC_006273.1 + 139111 0.66 0.597943
Target:  5'- cGUCGCC-CUCGA-CG-GCGGuacugaaGCCGCCg -3'
miRNA:   3'- -UAGCGGaGGGCUcGCuCGCC-------CGGCGG- -5'
29897 3' -65 NC_006273.1 + 137963 0.67 0.580219
Target:  5'- cGUCGUCggUCUCGAGCGccccccgauGUaGGGCCGCUc -3'
miRNA:   3'- -UAGCGG--AGGGCUCGCu--------CG-CCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 137165 0.68 0.489551
Target:  5'- -aCGCCUCguCUGAGCcGG-GGuGCCGCCg -3'
miRNA:   3'- uaGCGGAG--GGCUCGcUCgCC-CGGCGG- -5'
29897 3' -65 NC_006273.1 + 136494 0.66 0.642969
Target:  5'- gAUCGCCguuugCCCGaAGCGGcuGUGgcuucucuggagacGGCCGUCa -3'
miRNA:   3'- -UAGCGGa----GGGC-UCGCU--CGC--------------CCGGCGG- -5'
29897 3' -65 NC_006273.1 + 133799 0.69 0.438402
Target:  5'- cGUCGUuaucUUCCCuGAGCGAGCGcgaacGCCGCg -3'
miRNA:   3'- -UAGCG----GAGGG-CUCGCUCGCc----CGGCGg -5'
29897 3' -65 NC_006273.1 + 131411 0.69 0.467026
Target:  5'- -aCGCCUCCaUGGGCGAGuUcgcgcgucugcuacuGGGCuCGCCc -3'
miRNA:   3'- uaGCGGAGG-GCUCGCUC-G---------------CCCG-GCGG- -5'
29897 3' -65 NC_006273.1 + 130214 0.67 0.543317
Target:  5'- -cCGgCUaCCUGGGCGAggccGCGGcGCCGCg -3'
miRNA:   3'- uaGCgGA-GGGCUCGCU----CGCC-CGGCGg -5'
29897 3' -65 NC_006273.1 + 129850 0.66 0.589536
Target:  5'- -cCGCCUCCCGAGgcaCGucgGGGCUGUg -3'
miRNA:   3'- uaGCGGAGGGCUC---GCucgCCCGGCGg -5'
29897 3' -65 NC_006273.1 + 124438 0.68 0.52515
Target:  5'- --gGCCgCgCGGGCGuGCGcGGCuCGCCg -3'
miRNA:   3'- uagCGGaGgGCUCGCuCGC-CCG-GCGG- -5'
29897 3' -65 NC_006273.1 + 124039 0.66 0.617619
Target:  5'- -aCGCCgcugaaCCC-AGCG-GCGcGGCCGCg -3'
miRNA:   3'- uaGCGGa-----GGGcUCGCuCGC-CCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.