Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29897 | 3' | -65 | NC_006273.1 | + | 120585 | 0.66 | 0.621373 |
Target: 5'- -gCGUCUUgCCGguggcGGCGAcguuuggguugcgcaGCGGGCUGCCa -3' miRNA: 3'- uaGCGGAG-GGC-----UCGCU---------------CGCCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 120498 | 0.66 | 0.617619 |
Target: 5'- -gUGCCggCCGcGCuAGCGGGCUGCa -3' miRNA: 3'- uaGCGGagGGCuCGcUCGCCCGGCGg -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 112537 | 0.66 | 0.589536 |
Target: 5'- cGUCGCCgcCCCGucugacGCGGucgccGCGucagcGGCCGCCg -3' miRNA: 3'- -UAGCGGa-GGGCu-----CGCU-----CGC-----CCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 108624 | 0.66 | 0.598878 |
Target: 5'- -gCGCCUCUgGAccacGCGcAGCgucaGGGCCuGCCg -3' miRNA: 3'- uaGCGGAGGgCU----CGC-UCG----CCCGG-CGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 105376 | 0.67 | 0.534206 |
Target: 5'- uGUCGCCgucaCCCGAGCccgugcaacAGCa-GCCGCCg -3' miRNA: 3'- -UAGCGGa---GGGCUCGc--------UCGccCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 96066 | 0.68 | 0.52515 |
Target: 5'- -cCGCCUCgguacccccuggCCGAgGCGAguccGCGGucGCCGCCu -3' miRNA: 3'- uaGCGGAG------------GGCU-CGCU----CGCC--CGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 95285 | 0.68 | 0.52515 |
Target: 5'- uGUgGCCggaagcgCUCGGGguCGAcgGUGGGCCGCCa -3' miRNA: 3'- -UAgCGGa------GGGCUC--GCU--CGCCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 90927 | 0.66 | 0.636397 |
Target: 5'- -aCGCCggcgcgcgagCCCGuguaguGCGAGCc-GCCGCCa -3' miRNA: 3'- uaGCGGa---------GGGCu-----CGCUCGccCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 89348 | 0.67 | 0.552479 |
Target: 5'- -gCGCggagUCCUGGGUGuGuCGGGCCGCg -3' miRNA: 3'- uaGCGg---AGGGCUCGCuC-GCCCGGCGg -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 87869 | 1.09 | 0.000776 |
Target: 5'- cAUCGCCUCCCGAGCGAGCGGGCCGCCg -3' miRNA: 3'- -UAGCGGAGGGCUCGCUCGCCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 86698 | 0.67 | 0.570934 |
Target: 5'- cUUGCCggCCGAGCccacgaugucGGGCaGGCCGCa -3' miRNA: 3'- uAGCGGagGGCUCG----------CUCGcCCGGCGg -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 85917 | 0.71 | 0.360446 |
Target: 5'- cAUCGCCUCCCGuccacgcaGGUGAauaaccucGCccucgGGGCCGUCg -3' miRNA: 3'- -UAGCGGAGGGC--------UCGCU--------CG-----CCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 82173 | 0.66 | 0.589536 |
Target: 5'- --aGCCUgCUCGuuGGUGuaaGGCGGaGCCGCCg -3' miRNA: 3'- uagCGGA-GGGC--UCGC---UCGCC-CGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 81737 | 0.7 | 0.390451 |
Target: 5'- -cCGCUUgCCCGAGCccugcgcgGAGcCGGGCUGCg -3' miRNA: 3'- uaGCGGA-GGGCUCG--------CUC-GCCCGGCGg -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 73859 | 0.67 | 0.570934 |
Target: 5'- -cCGCCguucgCgUGAGCGcggccgacauGCGGGCgCGCCa -3' miRNA: 3'- uaGCGGa----GgGCUCGCu---------CGCCCG-GCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 73754 | 0.71 | 0.3532 |
Target: 5'- --gGCCgaggCCCG-GC-AGCGGcGCCGCCa -3' miRNA: 3'- uagCGGa---GGGCuCGcUCGCC-CGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 70826 | 0.66 | 0.617619 |
Target: 5'- cUgGCCUUCgGcacGCuGGCGGGCCGaCCg -3' miRNA: 3'- uAgCGGAGGgCu--CGcUCGCCCGGC-GG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 64769 | 0.68 | 0.489551 |
Target: 5'- --aGCUgCCCGccGGCGGGC-GGCUGCCg -3' miRNA: 3'- uagCGGaGGGC--UCGCUCGcCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 57859 | 0.7 | 0.375245 |
Target: 5'- --aGCCgCgCCGAGCcAGCGGGCCcCCg -3' miRNA: 3'- uagCGGaG-GGCUCGcUCGCCCGGcGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 55771 | 0.66 | 0.636397 |
Target: 5'- -cCGcCCUCgCCGAugaguacggguaGCG-GUGGGCgGCCg -3' miRNA: 3'- uaGC-GGAG-GGCU------------CGCuCGCCCGgCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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