miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29897 3' -65 NC_006273.1 + 21249 0.66 0.589536
Target:  5'- gAUCGCCUg--GAGCGAGUGGGgcaaCUGCUg -3'
miRNA:   3'- -UAGCGGAgggCUCGCUCGCCC----GGCGG- -5'
29897 3' -65 NC_006273.1 + 96066 0.68 0.52515
Target:  5'- -cCGCCUCgguacccccuggCCGAgGCGAguccGCGGucGCCGCCu -3'
miRNA:   3'- uaGCGGAG------------GGCU-CGCU----CGCC--CGGCGG- -5'
29897 3' -65 NC_006273.1 + 22255 0.67 0.534206
Target:  5'- -gCGCCgg-CGAGCGAcGCGGcuCCGCCg -3'
miRNA:   3'- uaGCGGaggGCUCGCU-CGCCc-GGCGG- -5'
29897 3' -65 NC_006273.1 + 105376 0.67 0.534206
Target:  5'- uGUCGCCgucaCCCGAGCccgugcaacAGCa-GCCGCCg -3'
miRNA:   3'- -UAGCGGa---GGGCUCGc--------UCGccCGGCGG- -5'
29897 3' -65 NC_006273.1 + 130214 0.67 0.543317
Target:  5'- -cCGgCUaCCUGGGCGAggccGCGGcGCCGCg -3'
miRNA:   3'- uaGCgGA-GGGCUCGCU----CGCC-CGGCGg -5'
29897 3' -65 NC_006273.1 + 73859 0.67 0.570934
Target:  5'- -cCGCCguucgCgUGAGCGcggccgacauGCGGGCgCGCCa -3'
miRNA:   3'- uaGCGGa----GgGCUCGCu---------CGCCCG-GCGG- -5'
29897 3' -65 NC_006273.1 + 188156 0.67 0.570934
Target:  5'- gGUCGCCgagUUCCGGGuCGGGCacauccauGGCuCGCCg -3'
miRNA:   3'- -UAGCGG---AGGGCUC-GCUCGc-------CCG-GCGG- -5'
29897 3' -65 NC_006273.1 + 178076 0.67 0.570934
Target:  5'- aGUCGUacucgggaUCuCUGAGCGAGaCGGGuuGCa -3'
miRNA:   3'- -UAGCGg-------AG-GGCUCGCUC-GCCCggCGg -5'
29897 3' -65 NC_006273.1 + 82173 0.66 0.589536
Target:  5'- --aGCCUgCUCGuuGGUGuaaGGCGGaGCCGCCg -3'
miRNA:   3'- uagCGGA-GGGC--UCGC---UCGCC-CGGCGG- -5'
29897 3' -65 NC_006273.1 + 124438 0.68 0.52515
Target:  5'- --gGCCgCgCGGGCGuGCGcGGCuCGCCg -3'
miRNA:   3'- uagCGGaGgGCUCGCuCGC-CCG-GCGG- -5'
29897 3' -65 NC_006273.1 + 95285 0.68 0.52515
Target:  5'- uGUgGCCggaagcgCUCGGGguCGAcgGUGGGCCGCCa -3'
miRNA:   3'- -UAgCGGa------GGGCUC--GCU--CGCCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 221290 0.68 0.507218
Target:  5'- --aGCCggcggUCCGAGCcacuGAGCGguucacagccccGGCCGCCg -3'
miRNA:   3'- uagCGGa----GGGCUCG----CUCGC------------CCGGCGG- -5'
29897 3' -65 NC_006273.1 + 196884 0.74 0.234774
Target:  5'- cGUCGCCgCCagcGGCGAGCGgcacggagacggaGGCCGCCg -3'
miRNA:   3'- -UAGCGGaGGgc-UCGCUCGC-------------CCGGCGG- -5'
29897 3' -65 NC_006273.1 + 73754 0.71 0.3532
Target:  5'- --gGCCgaggCCCG-GC-AGCGGcGCCGCCa -3'
miRNA:   3'- uagCGGa---GGGCuCGcUCGCC-CGGCGG- -5'
29897 3' -65 NC_006273.1 + 85917 0.71 0.360446
Target:  5'- cAUCGCCUCCCGuccacgcaGGUGAauaaccucGCccucgGGGCCGUCg -3'
miRNA:   3'- -UAGCGGAGGGC--------UCGCU--------CG-----CCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 57859 0.7 0.375245
Target:  5'- --aGCCgCgCCGAGCcAGCGGGCCcCCg -3'
miRNA:   3'- uagCGGaG-GGCUCGcUCGCCCGGcGG- -5'
29897 3' -65 NC_006273.1 + 81737 0.7 0.390451
Target:  5'- -cCGCUUgCCCGAGCccugcgcgGAGcCGGGCUGCg -3'
miRNA:   3'- uaGCGGA-GGGCUCG--------CUC-GCCCGGCGg -5'
29897 3' -65 NC_006273.1 + 64769 0.68 0.489551
Target:  5'- --aGCUgCCCGccGGCGGGC-GGCUGCCg -3'
miRNA:   3'- uagCGGaGGGC--UCGCUCGcCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 137165 0.68 0.489551
Target:  5'- -aCGCCUCguCUGAGCcGG-GGuGCCGCCg -3'
miRNA:   3'- uaGCGGAG--GGCUCGcUCgCC-CGGCGG- -5'
29897 3' -65 NC_006273.1 + 195939 0.68 0.495703
Target:  5'- -aCGCCgggccacggcguccaCCGGGUaGAaccccGCGGGCCGCCg -3'
miRNA:   3'- uaGCGGag-------------GGCUCG-CU-----CGCCCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.