Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29897 | 3' | -65 | NC_006273.1 | + | 85917 | 0.71 | 0.360446 |
Target: 5'- cAUCGCCUCCCGuccacgcaGGUGAauaaccucGCccucgGGGCCGUCg -3' miRNA: 3'- -UAGCGGAGGGC--------UCGCU--------CG-----CCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 57859 | 0.7 | 0.375245 |
Target: 5'- --aGCCgCgCCGAGCcAGCGGGCCcCCg -3' miRNA: 3'- uagCGGaG-GGCUCGcUCGCCCGGcGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 81737 | 0.7 | 0.390451 |
Target: 5'- -cCGCUUgCCCGAGCccugcgcgGAGcCGGGCUGCg -3' miRNA: 3'- uaGCGGA-GGGCUCG--------CUC-GCCCGGCGg -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 64769 | 0.68 | 0.489551 |
Target: 5'- --aGCUgCCCGccGGCGGGC-GGCUGCCg -3' miRNA: 3'- uagCGGaGGGC--UCGCUCGcCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 137165 | 0.68 | 0.489551 |
Target: 5'- -aCGCCUCguCUGAGCcGG-GGuGCCGCCg -3' miRNA: 3'- uaGCGGAG--GGCUCGcUCgCC-CGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 195939 | 0.68 | 0.495703 |
Target: 5'- -aCGCCgggccacggcguccaCCGGGUaGAaccccGCGGGCCGCCg -3' miRNA: 3'- uaGCGGag-------------GGCUCG-CU-----CGCCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 105376 | 0.67 | 0.534206 |
Target: 5'- uGUCGCCgucaCCCGAGCccgugcaacAGCa-GCCGCCg -3' miRNA: 3'- -UAGCGGa---GGGCUCGc--------UCGccCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 22255 | 0.67 | 0.534206 |
Target: 5'- -gCGCCgg-CGAGCGAcGCGGcuCCGCCg -3' miRNA: 3'- uaGCGGaggGCUCGCU-CGCCc-GGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 96066 | 0.68 | 0.52515 |
Target: 5'- -cCGCCUCgguacccccuggCCGAgGCGAguccGCGGucGCCGCCu -3' miRNA: 3'- uaGCGGAG------------GGCU-CGCU----CGCC--CGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 124438 | 0.68 | 0.52515 |
Target: 5'- --gGCCgCgCGGGCGuGCGcGGCuCGCCg -3' miRNA: 3'- uagCGGaGgGCUCGCuCGC-CCG-GCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 95285 | 0.68 | 0.52515 |
Target: 5'- uGUgGCCggaagcgCUCGGGguCGAcgGUGGGCCGCCa -3' miRNA: 3'- -UAgCGGa------GGGCUC--GCU--CGCCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 221290 | 0.68 | 0.507218 |
Target: 5'- --aGCCggcggUCCGAGCcacuGAGCGguucacagccccGGCCGCCg -3' miRNA: 3'- uagCGGa----GGGCUCG----CUCGC------------CCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 133799 | 0.69 | 0.438402 |
Target: 5'- cGUCGUuaucUUCCCuGAGCGAGCGcgaacGCCGCg -3' miRNA: 3'- -UAGCG----GAGGG-CUCGCUCGCc----CGGCGg -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 195129 | 0.69 | 0.422041 |
Target: 5'- cGUCGCC-CCagaaGAGCG-GUacgGGGCCGCa -3' miRNA: 3'- -UAGCGGaGGg---CUCGCuCG---CCCGGCGg -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 13570 | 0.7 | 0.401331 |
Target: 5'- -aCGCCgggugcucacccgCCGGGCGGccCGGGCCGCCg -3' miRNA: 3'- uaGCGGag-----------GGCUCGCUc-GCCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 220355 | 0.72 | 0.318534 |
Target: 5'- -aCGCC-CCgGGGCGuGCGGGCaaaaGCUa -3' miRNA: 3'- uaGCGGaGGgCUCGCuCGCCCGg---CGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 158804 | 0.73 | 0.257036 |
Target: 5'- aGUCGCCU-CCGGGCGAgGUGGG-CGCUu -3' miRNA: 3'- -UAGCGGAgGGCUCGCU-CGCCCgGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 194885 | 0.75 | 0.205603 |
Target: 5'- gGUCGCCUgUCCGgcAGC-AGcCGGGCCGCCu -3' miRNA: 3'- -UAGCGGA-GGGC--UCGcUC-GCCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 46308 | 0.75 | 0.200981 |
Target: 5'- -cCGCCgCCCGGGCGcaagaAGC-GGCCGCCu -3' miRNA: 3'- uaGCGGaGGGCUCGC-----UCGcCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 90927 | 0.66 | 0.636397 |
Target: 5'- -aCGCCggcgcgcgagCCCGuguaguGCGAGCc-GCCGCCa -3' miRNA: 3'- uaGCGGa---------GGGCu-----CGCUCGccCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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