Results 61 - 68 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29897 | 3' | -65 | NC_006273.1 | + | 181687 | 0.68 | 0.478223 |
Target: 5'- uGUUGCCUgaaCGAGCauucacaacucucgGAGCGGGUgGCCu -3' miRNA: 3'- -UAGCGGAgg-GCUCG--------------CUCGCCCGgCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 170793 | 0.68 | 0.480826 |
Target: 5'- cUCGCgCUCCaaAGCGAGCGauGUCGCCc -3' miRNA: 3'- uAGCG-GAGGgcUCGCUCGCc-CGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 142517 | 0.68 | 0.489551 |
Target: 5'- -cCGCCUCuuGGGCGGuucuaCGGGCCucGCUu -3' miRNA: 3'- uaGCGGAGggCUCGCUc----GCCCGG--CGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 1046 | 0.68 | 0.495703 |
Target: 5'- -aCGCCgggccacggcguccaCCGGGUaGAaccccGCGGGCCGCCg -3' miRNA: 3'- uaGCGGag-------------GGCUCG-CU-----CGCCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 1992 | 0.68 | 0.497467 |
Target: 5'- cGUCGCg-CCagcGGCGAGCGgcacggagacggaGGCCGCCg -3' miRNA: 3'- -UAGCGgaGGgc-UCGCUCGC-------------CCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 200662 | 0.68 | 0.49835 |
Target: 5'- uGUCGCacgCCCGAGgaucuGGC-GGCCGCCg -3' miRNA: 3'- -UAGCGga-GGGCUCgc---UCGcCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 189512 | 0.68 | 0.507218 |
Target: 5'- -cCGCCgCgCUGuGUGAGaguuccaGGGCCGCCg -3' miRNA: 3'- uaGCGGaG-GGCuCGCUCg------CCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 87869 | 1.09 | 0.000776 |
Target: 5'- cAUCGCCUCCCGAGCGAGCGGGCCGCCg -3' miRNA: 3'- -UAGCGGAGGGCUCGCUCGCCCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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