miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29897 3' -65 NC_006273.1 + 55771 0.66 0.636397
Target:  5'- -cCGcCCUCgCCGAugaguacggguaGCG-GUGGGCgGCCg -3'
miRNA:   3'- uaGC-GGAG-GGCU------------CGCuCGCCCGgCGG- -5'
29897 3' -65 NC_006273.1 + 64769 0.68 0.489551
Target:  5'- --aGCUgCCCGccGGCGGGC-GGCUGCCg -3'
miRNA:   3'- uagCGGaGGGC--UCGCUCGcCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 81737 0.7 0.390451
Target:  5'- -cCGCUUgCCCGAGCccugcgcgGAGcCGGGCUGCg -3'
miRNA:   3'- uaGCGGA-GGGCUCG--------CUC-GCCCGGCGg -5'
29897 3' -65 NC_006273.1 + 57859 0.7 0.375245
Target:  5'- --aGCCgCgCCGAGCcAGCGGGCCcCCg -3'
miRNA:   3'- uagCGGaG-GGCUCGcUCGCCCGGcGG- -5'
29897 3' -65 NC_006273.1 + 73754 0.71 0.3532
Target:  5'- --gGCCgaggCCCG-GC-AGCGGcGCCGCCa -3'
miRNA:   3'- uagCGGa---GGGCuCGcUCGCC-CGGCGG- -5'
29897 3' -65 NC_006273.1 + 96066 0.68 0.52515
Target:  5'- -cCGCCUCgguacccccuggCCGAgGCGAguccGCGGucGCCGCCu -3'
miRNA:   3'- uaGCGGAG------------GGCU-CGCU----CGCC--CGGCGG- -5'
29897 3' -65 NC_006273.1 + 22255 0.67 0.534206
Target:  5'- -gCGCCgg-CGAGCGAcGCGGcuCCGCCg -3'
miRNA:   3'- uaGCGGaggGCUCGCU-CGCCc-GGCGG- -5'
29897 3' -65 NC_006273.1 + 105376 0.67 0.534206
Target:  5'- uGUCGCCgucaCCCGAGCccgugcaacAGCa-GCCGCCg -3'
miRNA:   3'- -UAGCGGa---GGGCUCGc--------UCGccCGGCGG- -5'
29897 3' -65 NC_006273.1 + 154844 0.66 0.636397
Target:  5'- -aCGCacgCCCu-GCGAGCaGGCgGCCu -3'
miRNA:   3'- uaGCGga-GGGcuCGCUCGcCCGgCGG- -5'
29897 3' -65 NC_006273.1 + 148682 0.66 0.627006
Target:  5'- --gGCCUgCCCGAcaucGUGGGCcGGCCGgCa -3'
miRNA:   3'- uagCGGA-GGGCU----CGCUCGcCCGGCgG- -5'
29897 3' -65 NC_006273.1 + 120585 0.66 0.621373
Target:  5'- -gCGUCUUgCCGguggcGGCGAcguuuggguugcgcaGCGGGCUGCCa -3'
miRNA:   3'- uaGCGGAG-GGC-----UCGCU---------------CGCCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 153783 0.66 0.617619
Target:  5'- uUCgGCCUCCgccGCGGcCGcGGCCGCCg -3'
miRNA:   3'- uAG-CGGAGGgcuCGCUcGC-CCGGCGG- -5'
29897 3' -65 NC_006273.1 + 228742 0.66 0.608241
Target:  5'- -gUGUCUCaUCG-GUGAGaCGaGGCCGCCg -3'
miRNA:   3'- uaGCGGAG-GGCuCGCUC-GC-CCGGCGG- -5'
29897 3' -65 NC_006273.1 + 229519 0.66 0.589536
Target:  5'- -aCGaCCcacgaCCCGAGcCGAaggaGGGCCGCCa -3'
miRNA:   3'- uaGC-GGa----GGGCUC-GCUcg--CCCGGCGG- -5'
29897 3' -65 NC_006273.1 + 139111 0.66 0.597943
Target:  5'- cGUCGCC-CUCGA-CG-GCGGuacugaaGCCGCCg -3'
miRNA:   3'- -UAGCGGaGGGCUcGCuCGCC-------CGGCGG- -5'
29897 3' -65 NC_006273.1 + 112537 0.66 0.589536
Target:  5'- cGUCGCCgcCCCGucugacGCGGucgccGCGucagcGGCCGCCg -3'
miRNA:   3'- -UAGCGGa-GGGCu-----CGCU-----CGC-----CCGGCGG- -5'
29897 3' -65 NC_006273.1 + 21249 0.66 0.589536
Target:  5'- gAUCGCCUg--GAGCGAGUGGGgcaaCUGCUg -3'
miRNA:   3'- -UAGCGGAgggCUCGCUCGCCC----GGCGG- -5'
29897 3' -65 NC_006273.1 + 82173 0.66 0.589536
Target:  5'- --aGCCUgCUCGuuGGUGuaaGGCGGaGCCGCCg -3'
miRNA:   3'- uagCGGA-GGGC--UCGC---UCGCC-CGGCGG- -5'
29897 3' -65 NC_006273.1 + 178076 0.67 0.570934
Target:  5'- aGUCGUacucgggaUCuCUGAGCGAGaCGGGuuGCa -3'
miRNA:   3'- -UAGCGg-------AG-GGCUCGCUC-GCCCggCGg -5'
29897 3' -65 NC_006273.1 + 188156 0.67 0.570934
Target:  5'- gGUCGCCgagUUCCGGGuCGGGCacauccauGGCuCGCCg -3'
miRNA:   3'- -UAGCGG---AGGGCUC-GCUCGc-------CCG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.