Results 61 - 68 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29897 | 3' | -65 | NC_006273.1 | + | 139111 | 0.66 | 0.597943 |
Target: 5'- cGUCGCC-CUCGA-CG-GCGGuacugaaGCCGCCg -3' miRNA: 3'- -UAGCGGaGGGCUcGCuCGCC-------CGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 229519 | 0.66 | 0.589536 |
Target: 5'- -aCGaCCcacgaCCCGAGcCGAaggaGGGCCGCCa -3' miRNA: 3'- uaGC-GGa----GGGCUC-GCUcg--CCCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 112537 | 0.66 | 0.589536 |
Target: 5'- cGUCGCCgcCCCGucugacGCGGucgccGCGucagcGGCCGCCg -3' miRNA: 3'- -UAGCGGa-GGGCu-----CGCU-----CGC-----CCGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 21249 | 0.66 | 0.589536 |
Target: 5'- gAUCGCCUg--GAGCGAGUGGGgcaaCUGCUg -3' miRNA: 3'- -UAGCGGAgggCUCGCUCGCCC----GGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 82173 | 0.66 | 0.589536 |
Target: 5'- --aGCCUgCUCGuuGGUGuaaGGCGGaGCCGCCg -3' miRNA: 3'- uagCGGA-GGGC--UCGC---UCGCC-CGGCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 178076 | 0.67 | 0.570934 |
Target: 5'- aGUCGUacucgggaUCuCUGAGCGAGaCGGGuuGCa -3' miRNA: 3'- -UAGCGg-------AG-GGCUCGCUC-GCCCggCGg -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 188156 | 0.67 | 0.570934 |
Target: 5'- gGUCGCCgagUUCCGGGuCGGGCacauccauGGCuCGCCg -3' miRNA: 3'- -UAGCGG---AGGGCUC-GCUCGc-------CCG-GCGG- -5' |
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29897 | 3' | -65 | NC_006273.1 | + | 143511 | 0.75 | 0.192008 |
Target: 5'- -cUGUCUCCUGGGCGAGCauGGcGCCGCg -3' miRNA: 3'- uaGCGGAGGGCUCGCUCG--CC-CGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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