miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2990 3' -56.7 NC_001493.1 + 30199 0.66 0.875388
Target:  5'- gCGGGCCGCuuacGCGGCGgaGCGAgCCGUg-- -3'
miRNA:   3'- -GUUCGGUG----UGUCGC--UGCUgGGCAgca -5'
2990 3' -56.7 NC_001493.1 + 63930 0.66 0.86051
Target:  5'- ---aCCACAuCGGCGACG-CCCG-CGg -3'
miRNA:   3'- guucGGUGU-GUCGCUGCuGGGCaGCa -5'
2990 3' -56.7 NC_001493.1 + 68141 0.66 0.86051
Target:  5'- -cAGCCAUACauGGUGACGACUaccaGUCu- -3'
miRNA:   3'- guUCGGUGUG--UCGCUGCUGGg---CAGca -5'
2990 3' -56.7 NC_001493.1 + 57297 0.67 0.836661
Target:  5'- ---aUCACACAgGCGACGAagguCCCGUcCGUg -3'
miRNA:   3'- guucGGUGUGU-CGCUGCU----GGGCA-GCA- -5'
2990 3' -56.7 NC_001493.1 + 113529 0.67 0.836661
Target:  5'- gCAAGCCccGCGCAGUGAgGgaccACCCGUg-- -3'
miRNA:   3'- -GUUCGG--UGUGUCGCUgC----UGGGCAgca -5'
2990 3' -56.7 NC_001493.1 + 64104 0.67 0.819819
Target:  5'- cCGA-CCACAcCGGCGACG-CCCG-CGg -3'
miRNA:   3'- -GUUcGGUGU-GUCGCUGCuGGGCaGCa -5'
2990 3' -56.7 NC_001493.1 + 84941 0.67 0.811138
Target:  5'- --uGCCACG-GGCGAUGACgCGUUGa -3'
miRNA:   3'- guuCGGUGUgUCGCUGCUGgGCAGCa -5'
2990 3' -56.7 NC_001493.1 + 66034 0.67 0.802294
Target:  5'- gAGGCgguaucUGCACGGCGACcGCCgCGUCGa -3'
miRNA:   3'- gUUCG------GUGUGUCGCUGcUGG-GCAGCa -5'
2990 3' -56.7 NC_001493.1 + 63173 0.67 0.802294
Target:  5'- gAAGCC-CACgggAGCGAcCGACaCCGUgGUg -3'
miRNA:   3'- gUUCGGuGUG---UCGCU-GCUG-GGCAgCA- -5'
2990 3' -56.7 NC_001493.1 + 79679 0.67 0.793296
Target:  5'- cCAAGCUACA-AGCGGCcaGGCUCGUCu- -3'
miRNA:   3'- -GUUCGGUGUgUCGCUG--CUGGGCAGca -5'
2990 3' -56.7 NC_001493.1 + 97564 0.67 0.793296
Target:  5'- gGAGCgACGCGGgGuugacaaauGCGGCCuCGUCGa -3'
miRNA:   3'- gUUCGgUGUGUCgC---------UGCUGG-GCAGCa -5'
2990 3' -56.7 NC_001493.1 + 63864 0.67 0.793296
Target:  5'- gGAGCCaacgACACcGCGaACGACaCCGUgGUg -3'
miRNA:   3'- gUUCGG----UGUGuCGC-UGCUG-GGCAgCA- -5'
2990 3' -56.7 NC_001493.1 + 27874 0.67 0.793296
Target:  5'- uGAGCuCACGaccacCGGCGuACGAUCCGUgGUa -3'
miRNA:   3'- gUUCG-GUGU-----GUCGC-UGCUGGGCAgCA- -5'
2990 3' -56.7 NC_001493.1 + 53031 0.68 0.784152
Target:  5'- aGAGUgACGCGGCgGACGACCCu---- -3'
miRNA:   3'- gUUCGgUGUGUCG-CUGCUGGGcagca -5'
2990 3' -56.7 NC_001493.1 + 109148 0.68 0.78323
Target:  5'- --cGCCGCACGGggagagaUGGCGACCCGgUGa -3'
miRNA:   3'- guuCGGUGUGUC-------GCUGCUGGGCaGCa -5'
2990 3' -56.7 NC_001493.1 + 56375 0.68 0.765464
Target:  5'- cCAGGUCACACAgGgGGCGAUCCaGaUCGg -3'
miRNA:   3'- -GUUCGGUGUGU-CgCUGCUGGG-C-AGCa -5'
2990 3' -56.7 NC_001493.1 + 33152 0.68 0.765464
Target:  5'- aCAAGCUACugAuccugGcCGACGACCCGaUCa- -3'
miRNA:   3'- -GUUCGGUGugU-----C-GCUGCUGGGC-AGca -5'
2990 3' -56.7 NC_001493.1 + 48362 0.68 0.736564
Target:  5'- uGAGCCuguGCACgAGCGAgCGcaGCCUGUCGa -3'
miRNA:   3'- gUUCGG---UGUG-UCGCU-GC--UGGGCAGCa -5'
2990 3' -56.7 NC_001493.1 + 62966 0.69 0.726737
Target:  5'- gAAGCC-CACGGgGGCGACCgGcacCGUg -3'
miRNA:   3'- gUUCGGuGUGUCgCUGCUGGgCa--GCA- -5'
2990 3' -56.7 NC_001493.1 + 63128 0.69 0.726737
Target:  5'- gAAGCC-CACGGgGGCGACCgGcacCGUg -3'
miRNA:   3'- gUUCGGuGUGUCgCUGCUGGgCa--GCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.